SEC24B (SEC24 homolog B, COPII coat complex component) - Rat Genome Database

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Gene: SEC24B (SEC24 homolog B, COPII coat complex component) Sus scrofa
Analyze
Symbol: SEC24B
Name: SEC24 homolog B, COPII coat complex component
RGD ID: 14166348
Description: ENCODES a protein that exhibits zinc ion binding (inferred); INVOLVED IN aorta morphogenesis (ortholog); auditory receptor cell morphogenesis (ortholog); auditory receptor cell stereocilium organization (ortholog); FOUND IN COPII-coated ER to Golgi transport vesicle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: protein transport protein Sec24B; SEC24 family, member B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8112,670,533 - 112,762,858 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18112,670,529 - 112,762,870 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28120,752,183 - 120,853,274 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
SEC24B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8112,670,533 - 112,762,858 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18112,670,529 - 112,762,870 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28120,752,183 - 120,853,274 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SEC24B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl4109,433,772 - 109,540,896 (+)EnsemblGRCh38hg38GRCh38
GRCh384109,433,815 - 109,540,896 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh374110,354,971 - 110,462,052 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364110,574,420 - 110,681,064 (+)NCBINCBI36hg18NCBI36
Build 344110,712,474 - 110,819,215NCBI
Celera4107,677,967 - 107,755,474 (+)NCBI
Cytogenetic Map4q25NCBI
HuRef4106,087,577 - 106,194,359 (+)NCBIHuRef
CHM1_14110,331,615 - 110,438,242 (+)NCBICHM1_1
Sec24b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393129,776,408 - 129,855,248 (-)NCBIGRCm39mm39
GRCm39 Ensembl3129,776,408 - 129,855,202 (-)Ensembl
GRCm383129,982,759 - 130,061,599 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3129,982,759 - 130,061,553 (-)EnsemblGRCm38mm10GRCm38
MGSCv373129,686,103 - 129,763,825 (-)NCBIGRCm37mm9NCBIm37
MGSCv363129,975,207 - 130,052,929 (-)NCBImm8
Celera3136,497,733 - 136,556,236 (-)NCBICelera
Cytogenetic Map3G3NCBI
Sec24b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22218,562,670 - 218,632,753 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl2218,562,676 - 218,632,699 (-)Ensembl
Rnor_6.02230,286,886 - 230,356,887 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2230,287,296 - 230,356,919 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02249,637,718 - 249,707,712 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42227,461,119 - 227,531,065 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12227,447,792 - 227,517,590 (-)NCBI
Celera2210,841,947 - 210,911,948 (-)NCBICelera
Cytogenetic Map2q42NCBI
Sec24b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955496666,404 - 717,862 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955496666,728 - 732,829 (-)NCBIChiLan1.0ChiLan1.0
SEC24B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.14112,522,127 - 112,628,065 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4112,534,779 - 112,628,065 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v04101,937,119 - 102,043,038 (+)NCBIMhudiblu_PPA_v0panPan3
SEC24B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13229,671,702 - 29,766,628 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3229,671,738 - 29,772,192 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3212,262,816 - 12,357,346 (-)NCBI
ROS_Cfam_1.03229,891,927 - 29,987,080 (+)NCBI
UMICH_Zoey_3.13229,886,772 - 29,981,286 (+)NCBI
UNSW_CanFamBas_1.03229,631,735 - 29,726,164 (+)NCBI
UU_Cfam_GSD_1.03210,123,890 - 10,218,792 (-)NCBI
Sec24b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530111,178,119 - 11,274,431 (-)NCBI
SpeTri2.0NW_004936563676,564 - 772,877 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SEC24B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1757,363,133 - 57,463,056 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl757,387,167 - 57,462,276 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603736,006,296 - 36,107,106 (+)NCBIVero_WHO_p1.0
Sec24b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624830268,764 - 334,660 (-)NCBIHetGla_female_1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 8 2 3 5 2 15 2 3 3
Low 2 2 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000010010   ⟹   ENSSSCP00000009748
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl8112,670,533 - 112,762,744 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000042746   ⟹   ENSSSCP00000050801
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl8112,670,537 - 112,762,858 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000086087   ⟹   ENSSSCP00000071622
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl8112,670,533 - 112,746,151 (-)Ensembl
RefSeq Acc Id: XM_021101679   ⟹   XP_020957338
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.18112,670,529 - 112,762,753 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021101680   ⟹   XP_020957339
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.18112,670,529 - 112,762,753 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021101681   ⟹   XP_020957340
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.18112,670,529 - 112,762,870 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021101682   ⟹   XP_020957341
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.18112,670,529 - 112,762,752 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021101683   ⟹   XP_020957342
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.18112,670,529 - 112,762,753 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_020957340   ⟸   XM_021101681
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_020957342   ⟸   XM_021101683
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_020957339   ⟸   XM_021101680
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_020957338   ⟸   XM_021101679
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020957341   ⟸   XM_021101682
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: ENSSSCP00000009748   ⟸   ENSSSCT00000010010
RefSeq Acc Id: ENSSSCP00000050801   ⟸   ENSSSCT00000042746
RefSeq Acc Id: ENSSSCP00000071622   ⟸   ENSSSCT00000086087

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000009142 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070020150 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000009748 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000050801 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000071622 UniProtKB/TrEMBL
  ENSSSCP00070033482 UniProtKB/TrEMBL
  ENSSSCP00070033490 UniProtKB/TrEMBL
  ENSSSCP00070033497 UniProtKB/TrEMBL
  ENSSSCP00070033506 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000010010 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000042746 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000086087 UniProtKB/TrEMBL
  ENSSSCT00070039972 UniProtKB/TrEMBL
  ENSSSCT00070039981 UniProtKB/TrEMBL
  ENSSSCT00070039988 UniProtKB/TrEMBL
  ENSSSCT00070039997 UniProtKB/TrEMBL
Gene3D-CATH 3.40.20.10 UniProtKB/TrEMBL
  3.40.50.410 UniProtKB/TrEMBL
InterPro ADF-H/Gelsolin-like_dom_sf UniProtKB/TrEMBL
  Gelsolin-like_dom UniProtKB/TrEMBL
  Gelsolin-like_dom_sf UniProtKB/TrEMBL
  Sec23/24_helical_dom UniProtKB/TrEMBL
  Sec23/24_helical_dom_sf UniProtKB/TrEMBL
  Sec23/24_trunk_dom UniProtKB/TrEMBL
  Sec23_24_beta_S UniProtKB/TrEMBL
  Sec24-like_trunk_dom UniProtKB/TrEMBL
  vWFA_dom_sf UniProtKB/TrEMBL
  Znf_Sec23_Sec24 UniProtKB/TrEMBL
  Znf_Sec23_Sec24_sf UniProtKB/TrEMBL
NCBI Gene SEC24B ENTREZGENE
Pfam Gelsolin UniProtKB/TrEMBL
  Sec23_BS UniProtKB/TrEMBL
  Sec23_helical UniProtKB/TrEMBL
  Sec23_trunk UniProtKB/TrEMBL
  zf-Sec23_Sec24 UniProtKB/TrEMBL
Superfamily-SCOP SSF53300 UniProtKB/TrEMBL
  SSF81811 UniProtKB/TrEMBL
  SSF82754 UniProtKB/TrEMBL
  SSF82919 UniProtKB/TrEMBL
UniProt A0A287B3X9_PIG UniProtKB/TrEMBL
  A0A4X1UTR4_PIG UniProtKB/TrEMBL
  A0A4X1UVM2_PIG UniProtKB/TrEMBL
  A0A4X1UVP0_PIG UniProtKB/TrEMBL
  A0A4X1UXL2_PIG UniProtKB/TrEMBL
  A0A5G2RBS1_PIG UniProtKB/TrEMBL
  F1S129_PIG UniProtKB/TrEMBL
VGNC ID VGNC:92677 ENTREZGENE