FOXP4 (forkhead box P4) - Rat Genome Database

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Gene: FOXP4 (forkhead box P4) Sus scrofa
Analyze
Symbol: FOXP4
Name: forkhead box P4
RGD ID: 14165860
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN embryonic foregut morphogenesis (ortholog); heart development (ortholog); lung secretory cell differentiation (ortholog); ASSOCIATED WITH congestive heart failure (ortholog); Developmental Disabilities (ortholog); genetic disease (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: forkhead box protein P4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl736,754,754 - 36,793,527 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1736,760,643 - 36,793,620 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2742,037,738 - 42,088,634 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
FOXP4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl736,754,754 - 36,793,527 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1736,760,643 - 36,793,620 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2742,037,738 - 42,088,634 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FOXP4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38641,546,381 - 41,602,384 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl641,546,381 - 41,602,384 (+)EnsemblGRCh38hg38GRCh38
GRCh37641,514,119 - 41,570,122 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36641,622,142 - 41,678,100 (+)NCBINCBI36Build 36hg18NCBI36
Build 34641,622,141 - 41,678,099NCBI
Celera643,067,608 - 43,123,566 (+)NCBICelera
Cytogenetic Map6p21.1NCBI
HuRef641,232,474 - 41,288,223 (+)NCBIHuRef
CHM1_1641,517,252 - 41,573,197 (+)NCBICHM1_1
T2T-CHM13v2.0641,375,416 - 41,431,427 (+)NCBIT2T-CHM13v2.0
Foxp4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391748,178,058 - 48,235,401 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1748,178,058 - 48,235,570 (-)EnsemblGRCm39 Ensembl
GRCm381747,867,133 - 47,924,632 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1747,867,133 - 47,924,645 (-)EnsemblGRCm38mm10GRCm38
MGSCv371748,004,082 - 48,061,581 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361747,330,324 - 47,387,634 (-)NCBIMGSCv36mm8
Celera1751,308,820 - 51,367,567 (-)NCBICelera
Cytogenetic Map17CNCBI
cM Map1723.99NCBI
Foxp4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8920,556,270 - 20,612,967 (+)NCBIGRCr8
mRatBN7.2913,058,506 - 13,115,406 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl913,058,476 - 13,114,879 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx921,638,582 - 21,695,396 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0926,704,540 - 26,761,177 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0925,001,988 - 25,058,795 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0915,068,378 - 15,124,962 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl915,068,399 - 15,125,318 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0913,993,012 - 14,049,324 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.498,509,028 - 8,579,597 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.198,508,860 - 8,579,597 (+)NCBI
Celera910,812,577 - 10,868,280 (+)NCBICelera
Cytogenetic Map9q12NCBI
Foxp4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554378,014,939 - 8,057,033 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554378,029,346 - 8,056,243 (+)NCBIChiLan1.0ChiLan1.0
FOXP4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2556,041,558 - 56,095,770 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1651,911,928 - 51,967,539 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0641,133,751 - 41,189,709 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1642,455,809 - 42,496,205 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl642,459,420 - 42,496,205 (+)Ensemblpanpan1.1panPan2
FOXP4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11210,239,402 - 10,292,892 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1210,258,166 - 10,291,125 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1210,269,034 - 10,322,552 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01210,719,170 - 10,772,709 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1210,737,920 - 10,772,703 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11210,250,401 - 10,304,021 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01210,352,401 - 10,387,661 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01210,427,587 - 10,481,623 (+)NCBIUU_Cfam_GSD_1.0
Foxp4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494645,614,056 - 45,646,094 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647618,313,951 - 18,346,199 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647618,314,108 - 18,346,149 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FOXP4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11730,554,702 - 30,608,845 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1730,554,055 - 30,589,849 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604441,545,624 - 41,599,782 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Foxp4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475417,404,125 - 17,428,736 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475417,402,788 - 17,445,469 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in FOXP4
781 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 9 2 1 5 1 18 2 3 3
Below cutoff 1 2 2 1 5

Sequence


RefSeq Acc Id: ENSSSCT00000001800   ⟹   ENSSSCP00000001754
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl736,760,643 - 36,791,876 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000039661   ⟹   ENSSSCP00000056617
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl736,754,754 - 36,793,527 (+)Ensembl
RefSeq Acc Id: XM_013977903   ⟹   XP_013833357
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1736,760,643 - 36,793,620 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013833357 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000001754
  ENSSSCP00000001754.4
  ENSSSCP00000056617.2
  ENSSSCP00005038497.1
  ENSSSCP00035012729.1
  ENSSSCP00035012740.1
RefSeq Acc Id: XP_013833357   ⟸   XM_013977903
- UniProtKB: A0A8D0KHS1 (UniProtKB/TrEMBL),   F1RUY4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000056617   ⟸   ENSSSCT00000039661
RefSeq Acc Id: ENSSSCP00000001754   ⟸   ENSSSCT00000001800
Protein Domains
Fork-head


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000001619 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005038698 UniProtKB/TrEMBL
  ENSSSCG00035024460 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000001800 ENTREZGENE
  ENSSSCT00000001800.4 UniProtKB/TrEMBL
  ENSSSCT00000039661.2 UniProtKB/TrEMBL
  ENSSSCT00005062251.1 UniProtKB/TrEMBL
  ENSSSCT00035032328.1 UniProtKB/TrEMBL
  ENSSSCT00035032355.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/TrEMBL
  1.20.5.340 UniProtKB/TrEMBL
InterPro FH_FOXP4 UniProtKB/TrEMBL
  Fork_head_dom UniProtKB/TrEMBL
  FOXP-CC UniProtKB/TrEMBL
  TF_fork_head_CS_2 UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/TrEMBL
NCBI Gene FOXP4 ENTREZGENE
PANTHER FORKHEAD BOX P, ISOFORM C UniProtKB/TrEMBL
  FORKHEAD BOX PROTEIN P4 UniProtKB/TrEMBL
Pfam Forkhead UniProtKB/TrEMBL
  FOXP-CC UniProtKB/TrEMBL
PRINTS FORKHEAD UniProtKB/TrEMBL
PROSITE FORK_HEAD_2 UniProtKB/TrEMBL
  FORK_HEAD_3 UniProtKB/TrEMBL
SMART SM00339 UniProtKB/TrEMBL
Superfamily-SCOP SSF46785 UniProtKB/TrEMBL
UniProt A0A287BJR2_PIG UniProtKB/TrEMBL
  A0A8D0KHS1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0Z4N4_PIG UniProtKB/TrEMBL
  A0A8D0ZA72_PIG UniProtKB/TrEMBL
  F1RUY4 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:88224 ENTREZGENE