LOC100515533 (oocyte-specific histone RNA stem-loop-binding protein 2) - Rat Genome Database

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Gene: LOC100515533 (oocyte-specific histone RNA stem-loop-binding protein 2) Sus scrofa
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Symbol: LOC100515533
Name: oocyte-specific histone RNA stem-loop-binding protein 2
RGD ID: 14164896
Description: ENCODES a protein that exhibits histone pre-mRNA stem-loop binding (inferred); mRNA binding (inferred); RNA binding (inferred); INVOLVED IN mRNA 3'-end processing by stem-loop binding and cleavage (inferred); mRNA transport (inferred); FOUND IN cytoplasm (inferred); histone pre-mRNA 3'end processing complex (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: SLBP2; stem loop binding protein 2
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.12140,324,554 - 140,330,245 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22146,017,125 - 146,029,093 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22467188   PMID:30032202  


Genomics

Variants

.
Variants in LOC100515533
207 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system nervous system respiratory system
High
Medium
Low 2 1 1 3
Below cutoff 3 1 2 3 1

Sequence


Reference Sequences
RefSeq Acc Id: XM_021084840   ⟹   XP_020940499
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.12140,324,554 - 140,330,245 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_020940499   ⟸   XM_021084840
- UniProtKB: A0A4X1V842 (UniProtKB/TrEMBL),   I3LHJ1 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
Histone RNA hairpin-binding protein RNA-binding


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000023691 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015026306 UniProtKB/TrEMBL
  ENSSSCG00025054194 UniProtKB/TrEMBL
  ENSSSCG00030038329 UniProtKB/TrEMBL
  ENSSSCG00035044339 UniProtKB/TrEMBL
  ENSSSCG00040073802 UniProtKB/TrEMBL
  ENSSSCG00045034781 UniProtKB/TrEMBL
  ENSSSCG00050037768 UniProtKB/TrEMBL
  ENSSSCG00055029045 UniProtKB/TrEMBL
  ENSSSCG00060017899 UniProtKB/TrEMBL
  ENSSSCG00065063342 UniProtKB/TrEMBL
  ENSSSCG00070022315 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000024036 ENTREZGENE
  ENSSSCT00000024036.3 UniProtKB/TrEMBL
  ENSSSCT00000069243.1 UniProtKB/TrEMBL
  ENSSSCT00015035009.1 UniProtKB/TrEMBL
  ENSSSCT00025074174.1 UniProtKB/TrEMBL
  ENSSSCT00030053391.1 UniProtKB/TrEMBL
  ENSSSCT00035058905.1 UniProtKB/TrEMBL
  ENSSSCT00040101937.1 UniProtKB/TrEMBL
  ENSSSCT00045059695.1 UniProtKB/TrEMBL
  ENSSSCT00050050888.1 UniProtKB/TrEMBL
  ENSSSCT00055057688.1 UniProtKB/TrEMBL
  ENSSSCT00060023991.1 UniProtKB/TrEMBL
  ENSSSCT00065086884.1 UniProtKB/TrEMBL
  ENSSSCT00070044367.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.8.1120 UniProtKB/TrEMBL
InterPro SLBP1/SLBP2 UniProtKB/TrEMBL
  SLBP_RNA_bind UniProtKB/TrEMBL
  SLBP_RNA_bind_sf UniProtKB/TrEMBL
NCBI Gene LOC100515533 ENTREZGENE
PANTHER PTHR17408 UniProtKB/TrEMBL
  STEM-LOOP-BINDING PROTEIN-LIKE UniProtKB/TrEMBL
Pfam SLBP_RNA_bind UniProtKB/TrEMBL
UniProt A0A4X1V842 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2R1Z0_PIG UniProtKB/TrEMBL
  I3LHJ1 ENTREZGENE, UniProtKB/TrEMBL