FKRP (fukutin related protein) - Rat Genome Database
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Gene: FKRP (fukutin related protein) Sus scrofa
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Symbol: FKRP
Name: fukutin related protein
RGD ID: 14161256
Description: ENCODES a protein that exhibits dystroglycan binding (ortholog); INVOLVED IN glycoprotein biosynthetic process (ortholog); protein processing (ortholog); ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy (ortholog); autosomal recessive limb-girdle muscular dystrophy type 2I (ortholog); autosomal recessive limb-girdle muscular dystrophy type 2K (ortholog); FOUND IN extracellular space (ortholog); Golgi apparatus (ortholog); sarcolemma (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: fukutin-related protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl652,627,482 - 52,639,255 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1652,627,466 - 52,639,255 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2647,948,142 - 47,957,965 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
FKRP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl652,627,482 - 52,639,255 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1652,627,466 - 52,639,255 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2647,948,142 - 47,957,965 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FKRP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1946,746,046 - 46,776,988 (+)EnsemblGRCh38hg38GRCh38
GRCh381946,746,015 - 46,758,575 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371947,249,314 - 47,261,832 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361951,941,143 - 51,953,582 (+)NCBINCBI36hg18NCBI36
Build 341951,941,154 - 51,953,581NCBI
Celera1944,052,833 - 44,066,103 (+)NCBI
Cytogenetic Map19q13.32NCBI
HuRef1943,674,242 - 43,686,703 (+)NCBIHuRef
CHM1_11947,251,200 - 47,263,719 (+)NCBICHM1_1
Fkrp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39716,543,192 - 16,550,657 (-)NCBIGRCm39mm39
GRCm39 Ensembl716,543,171 - 16,550,657 (-)Ensembl
GRCm38716,809,267 - 16,816,732 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl716,809,246 - 16,816,732 (-)EnsemblGRCm38mm10GRCm38
MGSCv37717,394,616 - 17,402,081 (-)NCBIGRCm37mm9NCBIm37
MGSCv36715,967,789 - 15,975,237 (-)NCBImm8
Celera714,007,271 - 14,014,735 (-)NCBICelera
Cytogenetic Map7A2NCBI
Fkrp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2177,479,641 - 77,486,954 (-)NCBI
Rnor_6.0 Ensembl178,733,508 - 78,739,107 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0178,733,461 - 78,740,803 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0179,980,656 - 79,987,961 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4177,133,884 - 77,139,485 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1177,211,994 - 77,217,596 (-)NCBI
Celera171,964,734 - 71,970,335 (-)NCBICelera
Cytogenetic Map1q21NCBI
Fkrp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955574786,758 - 788,348 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955574779,672 - 789,621 (+)NCBIChiLan1.0ChiLan1.0
FKRP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11952,268,889 - 52,277,888 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1952,273,546 - 52,276,341 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01943,738,339 - 43,748,250 (+)NCBIMhudiblu_PPA_v0panPan3
FKRP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1109,168,644 - 109,178,319 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11109,166,527 - 109,177,393 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Fkrp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936664577,109 - 586,848 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC103234922
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1640,100,399 - 40,128,340 (+)NCBI
ChlSab1.1 Ensembl640,126,321 - 40,127,808 (+)Ensembl
Fkrp
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248326,849,001 - 6,858,931 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 9 4 3 5 2 23 2 3 1
Below cutoff 1 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000003442   ⟹   ENSSSCP00000003359
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl652,629,048 - 52,639,231 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000054916   ⟹   ENSSSCP00000052579
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl652,627,482 - 52,639,255 (+)Ensembl
RefSeq Acc Id: XM_021094618   ⟹   XP_020950277
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1652,627,466 - 52,639,255 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021094619   ⟹   XP_020950278
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1652,627,467 - 52,639,255 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021094620   ⟹   XP_020950279
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1652,627,493 - 52,639,255 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021094621   ⟹   XP_020950280
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1652,627,467 - 52,637,451 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002344710
RefSeq Status:
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1652,627,467 - 52,637,451 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020950277 (Get FASTA)   NCBI Sequence Viewer  
  XP_020950278 (Get FASTA)   NCBI Sequence Viewer  
  XP_020950279 (Get FASTA)   NCBI Sequence Viewer  
  XP_020950280 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_020950277   ⟸   XM_021094618
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020950278   ⟸   XM_021094619
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_020950280   ⟸   XM_021094621
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_020950279   ⟸   XM_021094620
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSSSCP00000052579   ⟸   ENSSSCT00000054916
RefSeq Acc Id: ENSSSCP00000003359   ⟸   ENSSSCT00000003442


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000003103 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000003359 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000052579 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000003442 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000054916 ENTREZGENE, UniProtKB/TrEMBL
InterPro LicD_fam UniProtKB/TrEMBL
NCBI Gene FKRP ENTREZGENE
Pfam LicD UniProtKB/TrEMBL
UniProt F1RM20_PIG UniProtKB/TrEMBL
VGNC ID VGNC:88152 ENTREZGENE