ITGA7 (integrin subunit alpha 7) - Rat Genome Database
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Pathways
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Gene: ITGA7 (integrin subunit alpha 7) Sus scrofa
Analyze
Symbol: ITGA7
Name: integrin subunit alpha 7
RGD ID: 14159625
Description: ENCODES a protein that exhibits cell adhesion molecule binding (ortholog); integrin binding (ortholog); laminin binding (ortholog); INVOLVED IN blood vessel morphogenesis (ortholog); cell adhesion (ortholog); cell migration (ortholog); PARTICIPATES IN integrin mediated signaling pathway; ASSOCIATED WITH arteriosclerosis (ortholog); cardiomyopathy (ortholog); Colonic Neoplasms (ortholog); FOUND IN cell surface (ortholog); cytoplasm (ortholog); integrin alpha7-beta1 complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: integrin, alpha 7; LOW QUALITY PROTEIN: integrin alpha-7
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl521,126,565 - 21,148,776 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1521,126,565 - 21,150,875 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
ITGA7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl521,126,565 - 21,148,776 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1521,126,565 - 21,150,875 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ITGA7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1255,684,568 - 55,716,043 (-)EnsemblGRCh38hg38GRCh38
GRCh381255,684,568 - 55,716,037 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371256,078,352 - 56,106,192 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361254,364,619 - 54,387,894 (-)NCBINCBI36hg18NCBI36
Build 341254,364,622 - 54,387,894NCBI
Celera1255,730,824 - 55,758,560 (-)NCBI
Cytogenetic Map12q13.2NCBI
HuRef1253,117,170 - 53,144,908 (-)NCBIHuRef
CHM1_11256,045,138 - 56,072,879 (-)NCBICHM1_1
Itga7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910128,769,633 - 128,794,155 (+)NCBIGRCm39mm39
GRCm39 Ensembl10128,769,687 - 128,794,151 (+)Ensembl
GRCm3810128,933,421 - 128,958,286 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10128,933,818 - 128,958,282 (+)EnsemblGRCm38mm10GRCm38
MGSCv3710128,370,869 - 128,395,342 (+)NCBIGRCm37mm9NCBIm37
MGSCv3610128,336,767 - 128,361,231 (+)NCBImm8
Celera10131,326,513 - 131,351,034 (+)NCBICelera
Cytogenetic Map10D3NCBI
cM Map1077.2NCBI
Itga7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.271,360,125 - 1,388,886 (+)NCBI
Rnor_6.0 Ensembl73,355,116 - 3,384,675 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.073,355,079 - 3,383,886 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.073,325,268 - 3,354,361 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.472,230,747 - 2,269,403 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.172,230,888 - 2,269,401 (+)NCBI
Celera71,231,167 - 1,259,461 (+)NCBICelera
Cytogenetic Map7q11NCBI
Itga7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554583,321,259 - 3,343,275 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554583,322,735 - 3,343,275 (-)NCBIChiLan1.0ChiLan1.0
ITGA7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11233,923,549 - 33,950,892 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1233,923,549 - 33,950,886 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01233,195,602 - 33,226,796 (+)NCBIMhudiblu_PPA_v0panPan3
ITGA7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1091,391 - 110,817 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11091,782 - 110,839 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Itga7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936646160,661 - 179,454 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ITGA7
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11151,634,324 - 51,656,251 (-)NCBI
Itga7
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462480212,303,969 - 12,332,737 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2 2 2 1 1
Low 7 2 3 4 22 2 1
Below cutoff 1 1 1 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000043916   ⟹   ENSSSCP00000043285
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl521,126,570 - 21,148,776 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000052431   ⟹   ENSSSCP00000036625
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl521,126,573 - 21,148,776 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000078802   ⟹   ENSSSCP00000069984
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl521,126,565 - 21,148,776 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000084371   ⟹   ENSSSCP00000062650
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl521,126,570 - 21,147,938 (-)Ensembl
RefSeq Acc Id: XM_021091233   ⟹   XP_020946892
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1521,126,565 - 21,150,875 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020946892 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_020946892   ⟸   XM_021091233
- Sequence:
RefSeq Acc Id: ENSSSCP00000069984   ⟸   ENSSSCT00000078802
RefSeq Acc Id: ENSSSCP00000062650   ⟸   ENSSSCT00000084371
RefSeq Acc Id: ENSSSCP00000036625   ⟸   ENSSSCT00000052431
RefSeq Acc Id: ENSSSCP00000043285   ⟸   ENSSSCT00000043916
Protein Domains
Integrin_alpha2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000036237 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000036625 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000043285 UniProtKB/TrEMBL
  ENSSSCP00000062650 UniProtKB/TrEMBL
  ENSSSCP00000069984 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000043916 UniProtKB/TrEMBL
  ENSSSCT00000052431 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000078802 UniProtKB/TrEMBL
  ENSSSCT00000084371 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.130 UniProtKB/TrEMBL
InterPro FG-GAP UniProtKB/TrEMBL
  Int_alpha_beta-p UniProtKB/TrEMBL
  Integrin_alpha UniProtKB/TrEMBL
  Integrin_alpha-2 UniProtKB/TrEMBL
  Integrin_alpha_C_CS UniProtKB/TrEMBL
  Integrin_alpha_N UniProtKB/TrEMBL
  Integrin_dom_sf UniProtKB/TrEMBL
NCBI Gene ITGA7 ENTREZGENE
Pfam FG-GAP UniProtKB/TrEMBL
  Integrin_alpha2 UniProtKB/TrEMBL
PRINTS INTEGRINA UniProtKB/TrEMBL
PROSITE FG_GAP UniProtKB/TrEMBL
  INTEGRIN_ALPHA UniProtKB/TrEMBL
SMART Int_alpha UniProtKB/TrEMBL
Superfamily-SCOP SSF69179 UniProtKB/TrEMBL
UniProt A0A286ZY33_PIG UniProtKB/TrEMBL
  A0A287AHE4_PIG UniProtKB/TrEMBL
  A0A5G2QFV1_PIG UniProtKB/TrEMBL
  A0A5G2RFV8_PIG UniProtKB/TrEMBL
VGNC ID VGNC:89237 ENTREZGENE