CDK13 (cyclin dependent kinase 13) - Rat Genome Database

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Gene: CDK13 (cyclin dependent kinase 13) Sus scrofa
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Symbol: CDK13
Name: cyclin dependent kinase 13
RGD ID: 14159224
Description: ENCODES a protein that exhibits ATP binding (inferred); protein kinase binding (inferred); protein serine/threonine kinase activity (inferred); INVOLVED IN negative regulation of stem cell differentiation (ortholog); ASSOCIATED WITH amenorrhea (ortholog); autism spectrum disorder (ortholog); congenital heart defects, dysmorphic facial features, and intellectual developmental disorder (ortholog); FOUND IN cyclin K-CDK13 complex (ortholog); nuclear cyclin-dependent protein kinase holoenzyme complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOW QUALITY PROTEIN: cyclin-dependent kinase 13
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1854,308,144 - 54,429,939 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11854,310,311 - 54,430,060 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21859,602,083 - 59,696,059 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:14681463  


Genomics

Comparative Map Data
CDK13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1854,308,144 - 54,429,939 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11854,310,311 - 54,430,060 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21859,602,083 - 59,696,059 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CDK13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl739,950,121 - 40,099,580 (+)EnsemblGRCh38hg38GRCh38
GRCh38739,949,664 - 40,099,580 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37739,989,855 - 40,139,179 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36739,956,484 - 40,101,679 (+)NCBINCBI36hg18NCBI36
Build 34739,763,348 - 39,908,385NCBI
Celera739,978,186 - 40,124,932 (+)NCBI
Cytogenetic Map7p14.1NCBI
HuRef739,873,916 - 40,020,642 (+)NCBIHuRef
CHM1_1739,992,473 - 40,139,235 (+)NCBICHM1_1
CRA_TCAGchr7v2740,028,472 - 40,175,171 (+)NCBI
Cdk13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391317,885,309 - 17,979,960 (-)NCBIGRCm39mm39
GRCm39 Ensembl1317,884,900 - 17,979,682 (-)Ensembl
GRCm381317,711,676 - 17,805,212 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1317,710,315 - 17,805,097 (-)EnsemblGRCm38mm10GRCm38
MGSCv371317,807,796 - 17,896,931 (-)NCBIGRCm37mm9NCBIm37
MGSCv361317,500,876 - 17,590,239 (-)NCBImm8
Celera1318,019,147 - 18,109,011 (-)NCBICelera
Cytogenetic Map13A2NCBI
Cdk13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21747,251,145 - 47,344,675 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1747,251,163 - 47,341,721 (+)Ensembl
Rnor_6.01749,833,194 - 49,922,932 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1749,833,400 - 49,921,550 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01747,889,843 - 47,979,627 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41755,146,130 - 55,235,545 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11755,071,862 - 55,237,672 (+)NCBI
Celera1743,336,076 - 43,426,801 (+)NCBICelera
Cytogenetic Map17q11NCBI
Cdk13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554603,590,854 - 3,701,148 (-)NCBIChiLan1.0ChiLan1.0
CDK13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1744,177,940 - 44,324,319 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl744,177,204 - 44,324,683 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0744,138,345 - 44,285,606 (-)NCBIMhudiblu_PPA_v0panPan3
CDK13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1189,801,350 - 9,920,401 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl189,803,535 - 9,920,281 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha189,647,410 - 9,768,703 (-)NCBI
ROS_Cfam_1.0189,847,718 - 9,969,056 (-)NCBI
UMICH_Zoey_3.1189,825,425 - 9,946,650 (-)NCBI
UNSW_CanFamBas_1.0189,795,209 - 9,922,569 (-)NCBI
UU_Cfam_GSD_1.0189,909,730 - 10,031,244 (-)NCBI
Cdk13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511896,084,330 - 96,178,160 (+)NCBI
SpeTri2.0NW_00493647815,296,055 - 15,387,749 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDK13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12118,551,273 - 18,688,889 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2118,553,446 - 18,688,525 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660623,715,053 - 3,852,971 (+)NCBIVero_WHO_p1.0
Cdk13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474021,100,780 - 21,202,147 (-)NCBIHetGla_female_1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 9 4 3 5 2 23 2 3 3
Low 1
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000018255   ⟹   ENSSSCP00000017763
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1854,312,479 - 54,429,939 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000084871   ⟹   ENSSSCP00000064356
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1854,308,144 - 54,428,929 (-)Ensembl
RefSeq Acc Id: XM_021078845   ⟹   XP_020934504
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11854,310,311 - 54,430,060 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020934504 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_020934504   ⟸   XM_021078845
- Sequence:
RefSeq Acc Id: ENSSSCP00000064356   ⟸   ENSSSCT00000084871
RefSeq Acc Id: ENSSSCP00000017763   ⟸   ENSSSCT00000018255
Protein Domains
Protein kinase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000016769 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070017706 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000017763 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000064356 UniProtKB/TrEMBL
  ENSSSCP00070029237 UniProtKB/TrEMBL
  ENSSSCP00070029241 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000018255 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000084871 UniProtKB/TrEMBL
  ENSSSCT00070034992 UniProtKB/TrEMBL
  ENSSSCT00070035000 UniProtKB/TrEMBL
InterPro Kinase-like_dom_sf UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/TrEMBL
  Ser/Thr_kinase_AS UniProtKB/TrEMBL
NCBI Gene CDK13 ENTREZGENE
Pfam Pkinase UniProtKB/TrEMBL
PROSITE PROTEIN_KINASE_ATP UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/TrEMBL
  PROTEIN_KINASE_ST UniProtKB/TrEMBL
SMART S_TKc UniProtKB/TrEMBL
Superfamily-SCOP SSF56112 UniProtKB/TrEMBL
UniProt A0A4X1UH12_PIG UniProtKB/TrEMBL
  A0A4X1UKU0_PIG UniProtKB/TrEMBL
  A0A5G2QIT5_PIG UniProtKB/TrEMBL
  F1SSC2_PIG UniProtKB/TrEMBL
VGNC ID VGNC:86497 ENTREZGENE