LOC100511891 (Protein PIP-1) - Rat Genome Database

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Gene: LOC100511891 (Protein PIP-1) Sus scrofa
Analyze
Symbol: LOC100511891
Name: Protein PIP-1
RGD ID: 14159061
Description: FOUND IN extracellular region (inferred)
Type: ncrna
RefSeq Status: MODEL
Previously known as: SSLP-1; SSLP1; uncharacterized LOC100511891
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1952,858,504 - 52,861,012 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2958,512,556 - 58,519,361 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:11840564  


Genomics

Variants

.
Variants in LOC100511891
54 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

reproductive system
High
Medium
Low 1
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: XR_002347109
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1952,858,742 - 52,861,012 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002347110
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1952,858,504 - 52,861,012 (+)NCBI
Sequence:
Protein Sequences
Ensembl Protein ENSSSCP00000016138.2
  ENSSSCP00015017638.1
  ENSSSCP00025012496.1
  ENSSSCP00035018257.1
  ENSSSCP00040037303.1
  ENSSSCP00055026706.1
  ENSSSCP00065020316.1
  ENSSSCP00070040297.1
GenBank Protein P83106 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
Protein Domains
UPAR/Ly6


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000015217 UniProtKB/Swiss-Prot
  ENSSSCG00015033681 UniProtKB/Swiss-Prot
  ENSSSCG00025021632 UniProtKB/Swiss-Prot
  ENSSSCG00035034484 UniProtKB/Swiss-Prot
  ENSSSCG00040062625 UniProtKB/Swiss-Prot
  ENSSSCG00055017014 UniProtKB/Swiss-Prot
  ENSSSCG00065034699 UniProtKB/Swiss-Prot
  ENSSSCG00070023939 UniProtKB/Swiss-Prot
Ensembl Transcript ENSSSCT00000016583.5 UniProtKB/Swiss-Prot
  ENSSSCT00015044632.1 UniProtKB/Swiss-Prot
  ENSSSCT00025029412.1 UniProtKB/Swiss-Prot
  ENSSSCT00035045686.1 UniProtKB/Swiss-Prot
  ENSSSCT00040085314.1 UniProtKB/Swiss-Prot
  ENSSSCT00055033572.1 UniProtKB/Swiss-Prot
  ENSSSCT00065047223.1 UniProtKB/Swiss-Prot
  ENSSSCT00070047755.1 UniProtKB/Swiss-Prot
NCBI Gene LOC100511891 ENTREZGENE
UniProt P83106 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-05-24 LOC100511891  Protein PIP-1  LOC100511891  uncharacterized LOC100511891  Symbol and/or name change 5135510 APPROVED