CLSPN (claspin) - Rat Genome Database

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Gene: CLSPN (claspin) Sus scrofa
Analyze
Symbol: CLSPN
Name: claspin
RGD ID: 14158247
Description: ENCODES a protein that exhibits anaphase-promoting complex binding (inferred); DNA secondary structure binding (inferred); INVOLVED IN DNA replication checkpoint signaling (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); COVID-19 (ortholog); genetic disease (ortholog); FOUND IN Golgi apparatus (inferred); nucleoplasm (inferred); nucleus (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl691,906,320 - 91,967,901 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1691,906,325 - 91,968,070 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:30032202  


Genomics

Comparative Map Data
CLSPN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl691,906,320 - 91,967,901 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1691,906,325 - 91,968,070 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CLSPN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38135,720,213 - 35,769,978 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl135,720,218 - 35,769,978 (-)EnsemblGRCh38hg38GRCh38
GRCh37136,185,814 - 36,235,579 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36135,974,405 - 36,008,138 (-)NCBINCBI36Build 36hg18NCBI36
Build 34135,870,910 - 35,904,644NCBI
Celera134,472,173 - 34,510,013 (-)NCBICelera
Cytogenetic Map1p34.3NCBI
HuRef134,315,523 - 34,353,366 (-)NCBIHuRef
CHM1_1136,314,135 - 36,351,971 (-)NCBICHM1_1
T2T-CHM13v2.0135,583,157 - 35,632,902 (-)NCBIT2T-CHM13v2.0
Clspn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394126,450,738 - 126,488,326 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4126,450,728 - 126,487,696 (+)EnsemblGRCm39 Ensembl
GRCm384126,556,957 - 126,594,533 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4126,556,935 - 126,593,903 (+)EnsemblGRCm38mm10GRCm38
MGSCv374126,234,224 - 126,271,147 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364126,059,329 - 126,096,207 (+)NCBIMGSCv36mm8
Celera4124,893,960 - 124,930,832 (+)NCBICelera
Cytogenetic Map4D2.2NCBI
cM Map460.9NCBI
Clspn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85144,134,619 - 144,169,531 (+)NCBIGRCr8
mRatBN7.25138,850,119 - 138,885,037 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5138,850,128 - 138,885,034 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5141,547,381 - 141,582,314 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05143,317,380 - 143,352,317 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05143,318,176 - 143,353,113 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05144,577,670 - 144,617,507 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5144,581,427 - 144,616,335 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05148,352,777 - 148,387,686 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45145,930,764 - 145,965,672 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15145,940,905 - 145,974,473 (+)NCBI
Celera5137,346,271 - 137,381,329 (+)NCBICelera
Cytogenetic Map5q36NCBI
Clspn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545213,802,285 - 13,833,735 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545213,801,073 - 13,842,387 (-)NCBIChiLan1.0ChiLan1.0
CLSPN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21191,072,321 - 191,122,400 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11190,193,495 - 190,243,560 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0134,991,082 - 35,040,515 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1136,168,444 - 36,218,544 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl136,182,726 - 36,218,544 (-)Ensemblpanpan1.1panPan2
CLSPN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1156,400,084 - 6,430,295 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl156,400,062 - 6,430,279 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha156,643,302 - 6,673,393 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0156,536,702 - 6,566,800 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl156,536,571 - 6,566,784 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1156,389,298 - 6,419,386 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0156,458,039 - 6,488,139 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0156,472,387 - 6,502,463 (+)NCBIUU_Cfam_GSD_1.0
Clspn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505852,442,950 - 52,510,235 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647418,268,984 - 18,300,211 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647418,267,740 - 18,304,658 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLSPN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12097,096,529 - 97,132,305 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603319,586,837 - 19,624,302 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Clspn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476418,773,261 - 18,805,853 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476418,773,495 - 18,805,772 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CLSPN
1314 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 10 3 3 5 2 22 3 3
Below cutoff 1 1 2

Sequence


RefSeq Acc Id: ENSSSCT00000004024   ⟹   ENSSSCP00000003933
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl691,906,320 - 91,967,863 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000042351   ⟹   ENSSSCP00000032585
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl691,906,364 - 91,967,901 (-)Ensembl
RefSeq Acc Id: XM_021095922   ⟹   XP_020951581
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1691,906,325 - 91,941,664 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021095923   ⟹   XP_020951582
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1691,906,327 - 91,968,070 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021095924   ⟹   XP_020951583
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1691,906,327 - 91,967,439 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020951581   ⟸   XM_021095922
- Peptide Label: isoform X1
- UniProtKB: A0A4X1VXM4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020951582   ⟸   XM_021095923
- Peptide Label: isoform X2
- UniProtKB: A0A4X1VX73 (UniProtKB/TrEMBL),   F1SV65 (UniProtKB/TrEMBL),   A0A8D1SC70 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020951583   ⟸   XM_021095924
- Peptide Label: isoform X2
- UniProtKB: A0A4X1VX73 (UniProtKB/TrEMBL),   F1SV65 (UniProtKB/TrEMBL),   A0A8D1SC70 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000032585   ⟸   ENSSSCT00000042351
RefSeq Acc Id: ENSSSCP00000003933   ⟸   ENSSSCT00000004024


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000003628 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015012065 UniProtKB/TrEMBL
  ENSSSCG00025028047 UniProtKB/TrEMBL
  ENSSSCG00035021563 UniProtKB/TrEMBL
  ENSSSCG00045011477 UniProtKB/TrEMBL
  ENSSSCG00055029498 UniProtKB/TrEMBL
  ENSSSCG00065003693 UniProtKB/TrEMBL
  ENSSSCG00070027423 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000004024 ENTREZGENE
  ENSSSCT00000004024.5 UniProtKB/TrEMBL
  ENSSSCT00000042351 ENTREZGENE
  ENSSSCT00000042351.3 UniProtKB/TrEMBL
  ENSSSCT00015015881.1 UniProtKB/TrEMBL
  ENSSSCT00015015970.1 UniProtKB/TrEMBL
  ENSSSCT00025038066.1 UniProtKB/TrEMBL
  ENSSSCT00025038287.1 UniProtKB/TrEMBL
  ENSSSCT00035028136.1 UniProtKB/TrEMBL
  ENSSSCT00035028142.1 UniProtKB/TrEMBL
  ENSSSCT00045019447.1 UniProtKB/TrEMBL
  ENSSSCT00045019484.1 UniProtKB/TrEMBL
  ENSSSCT00045019555.1 UniProtKB/TrEMBL
  ENSSSCT00045019625.1 UniProtKB/TrEMBL
  ENSSSCT00045019685.1 UniProtKB/TrEMBL
  ENSSSCT00055058591.1 UniProtKB/TrEMBL
  ENSSSCT00055058622.1 UniProtKB/TrEMBL
  ENSSSCT00055058663.1 UniProtKB/TrEMBL
  ENSSSCT00055058682.1 UniProtKB/TrEMBL
  ENSSSCT00055058704.1 UniProtKB/TrEMBL
  ENSSSCT00065005034.1 UniProtKB/TrEMBL
  ENSSSCT00065005038.1 UniProtKB/TrEMBL
  ENSSSCT00070054993.1 UniProtKB/TrEMBL
  ENSSSCT00070054995.1 UniProtKB/TrEMBL
InterPro Claspin UniProtKB/TrEMBL
NCBI Gene CLSPN ENTREZGENE
PANTHER CLASPIN UniProtKB/TrEMBL
  PTHR14396 UniProtKB/TrEMBL
UniProt A0A286ZLZ9_PIG UniProtKB/TrEMBL
  A0A4X1VX73 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1VXM4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0MMX6_PIG UniProtKB/TrEMBL
  A0A8D0MR29_PIG UniProtKB/TrEMBL
  A0A8D0Z1B0_PIG UniProtKB/TrEMBL
  A0A8D1SC70 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1SG87_PIG UniProtKB/TrEMBL
  F1SV65 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:86783 ENTREZGENE