P4HB (prolyl 4-hydroxylase subunit beta) - Rat Genome Database

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Gene: P4HB (prolyl 4-hydroxylase subunit beta) Sus scrofa
Analyze
Symbol: P4HB
Name: prolyl 4-hydroxylase subunit beta
RGD ID: 14157301
Description: ENCODES a protein that exhibits enzyme binding (ortholog); procollagen-proline 4-dioxygenase activity (ortholog); protein disulfide isomerase activity (ortholog); INVOLVED IN cellular response to interleukin-7 (ortholog); endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); Cole-Carpenter syndrome (ortholog); Cole-Carpenter Syndrome 1 (ortholog); FOUND IN endoplasmic reticulum lumen (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: prolyl 4-hydroxylase beta polypeptide; protein disulfide-isomerase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl121,121,824 - 1,131,289 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1121,121,816 - 1,131,291 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
P4HB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl121,121,824 - 1,131,289 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1121,121,816 - 1,131,291 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
P4HB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381781,843,166 - 81,860,535 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1781,843,159 - 81,860,856 (-)EnsemblGRCh38hg38GRCh38
GRCh371779,801,042 - 79,818,411 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361777,394,323 - 77,411,833 (-)NCBINCBI36Build 36hg18NCBI36
Celera1776,404,498 - 76,422,010 (-)NCBICelera
Cytogenetic Map17q25.3NCBI
HuRef1775,202,821 - 75,220,332 (-)NCBIHuRef
CHM1_11779,887,239 - 79,904,780 (-)NCBICHM1_1
T2T-CHM13v2.01782,710,331 - 82,727,700 (-)NCBIT2T-CHM13v2.0
P4hb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911120,451,124 - 120,464,079 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11120,451,124 - 120,464,079 (-)EnsemblGRCm39 Ensembl
GRCm3811120,560,298 - 120,573,253 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11120,560,298 - 120,573,253 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711120,421,618 - 120,434,250 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611120,376,394 - 120,389,026 (-)NCBIMGSCv36mm8
Celera11132,295,664 - 132,308,296 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1184.27NCBI
P4hb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810106,335,300 - 106,346,911 (-)NCBIGRCr8
mRatBN7.210105,836,972 - 105,848,583 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10105,836,982 - 105,848,500 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10110,941,098 - 110,952,604 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010110,404,126 - 110,415,632 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010105,757,420 - 105,769,031 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010109,736,459 - 109,748,070 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10109,736,458 - 109,747,987 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010109,329,596 - 109,341,091 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410109,950,221 - 109,961,716 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.110109,964,724 - 109,976,220 (-)NCBI
Celera10104,380,384 - 104,391,995 (-)NCBICelera
Cytogenetic Map10q32.3NCBI
P4hb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555061,307,932 - 1,324,027 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555061,307,932 - 1,322,011 (+)NCBIChiLan1.0ChiLan1.0
P4HB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21998,378,767 - 98,396,916 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan117103,279,545 - 103,297,401 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01776,248,252 - 76,266,152 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11781,950,826 - 81,968,329 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1781,950,422 - 81,968,109 (-)Ensemblpanpan1.1panPan2
P4HB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.19427,827 - 436,880 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl9427,830 - 436,064 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha91,029,990 - 1,039,034 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.091,021,195 - 1,030,242 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl91,021,122 - 1,030,242 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.191,046,356 - 1,055,402 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.091,172,930 - 1,181,988 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.091,251,854 - 1,260,908 (+)NCBIUU_Cfam_GSD_1.0
P4hb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056021,032,744 - 1,043,760 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365945,367,816 - 5,379,252 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365945,368,199 - 5,379,215 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
P4HB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11673,718,743 - 73,733,488 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1673,718,656 - 73,733,892 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607745,170,359 - 45,185,570 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
P4hb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480110,699,161 - 10,712,896 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480110,700,301 - 10,712,889 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in P4HB
63 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 4 3 5 2 16 2 3 3
Low 7
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000037157   ⟹   ENSSSCP00000039090
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl121,121,824 - 1,131,289 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000051214   ⟹   ENSSSCP00000046155
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl121,121,824 - 1,131,289 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000084770   ⟹   ENSSSCP00000066338
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl121,121,829 - 1,131,289 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000091643   ⟹   ENSSSCP00000068719
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl121,121,829 - 1,131,287 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000092109   ⟹   ENSSSCP00000076704
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl121,121,878 - 1,131,289 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000093972   ⟹   ENSSSCP00000076585
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl121,121,824 - 1,130,481 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000095056   ⟹   ENSSSCP00000077194
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl121,121,824 - 1,131,289 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000097694   ⟹   ENSSSCP00000075908
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl121,121,824 - 1,131,289 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000105905   ⟹   ENSSSCP00000075714
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl121,121,824 - 1,131,289 (+)Ensembl
RefSeq Acc Id: XM_021066427   ⟹   XP_020922086
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1121,121,816 - 1,131,291 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020922086   ⟸   XM_021066427
- UniProtKB: A0A4X1UBN3 (UniProtKB/TrEMBL),   G9F6X8 (UniProtKB/TrEMBL),   A0A8D0VI39 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000046155   ⟸   ENSSSCT00000051214
RefSeq Acc Id: ENSSSCP00000066338   ⟸   ENSSSCT00000084770
RefSeq Acc Id: ENSSSCP00000068719   ⟸   ENSSSCT00000091643
RefSeq Acc Id: ENSSSCP00000039090   ⟸   ENSSSCT00000037157
RefSeq Acc Id: ENSSSCP00000076704   ⟸   ENSSSCT00000092109
RefSeq Acc Id: ENSSSCP00000077194   ⟸   ENSSSCT00000095056
RefSeq Acc Id: ENSSSCP00000075908   ⟸   ENSSSCT00000097694
RefSeq Acc Id: ENSSSCP00000075714   ⟸   ENSSSCT00000105905
RefSeq Acc Id: ENSSSCP00000076585   ⟸   ENSSSCT00000093972
Protein Domains
Thioredoxin


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000039148 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025065603 UniProtKB/TrEMBL
  ENSSSCG00030009626 UniProtKB/TrEMBL
  ENSSSCG00035075146 UniProtKB/TrEMBL
  ENSSSCG00040024576 UniProtKB/TrEMBL
  ENSSSCG00045031373 UniProtKB/TrEMBL
  ENSSSCG00050064350 UniProtKB/TrEMBL
  ENSSSCG00055030097 UniProtKB/TrEMBL
  ENSSSCG00060071886 UniProtKB/TrEMBL
  ENSSSCG00065052593 UniProtKB/TrEMBL
  ENSSSCG00070015438 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000037157 ENTREZGENE
  ENSSSCT00000037157.3 UniProtKB/TrEMBL
  ENSSSCT00000051214.3 UniProtKB/TrEMBL
  ENSSSCT00000084770.2 UniProtKB/TrEMBL
  ENSSSCT00000091643.2 UniProtKB/TrEMBL
  ENSSSCT00000092109.1 UniProtKB/TrEMBL
  ENSSSCT00000093972.1 UniProtKB/TrEMBL
  ENSSSCT00000095056.1 UniProtKB/TrEMBL
  ENSSSCT00000097694.1 UniProtKB/TrEMBL
  ENSSSCT00000105905.1 UniProtKB/TrEMBL
  ENSSSCT00025090051.1 UniProtKB/TrEMBL
  ENSSSCT00025090190.1 UniProtKB/TrEMBL
  ENSSSCT00030013203.1 UniProtKB/TrEMBL
  ENSSSCT00035102336.1 UniProtKB/TrEMBL
  ENSSSCT00035102389.1 UniProtKB/TrEMBL
  ENSSSCT00040033304.1 UniProtKB/TrEMBL
  ENSSSCT00040033553.1 UniProtKB/TrEMBL
  ENSSSCT00045053761.1 UniProtKB/TrEMBL
  ENSSSCT00045053942.1 UniProtKB/TrEMBL
  ENSSSCT00050087631.1 UniProtKB/TrEMBL
  ENSSSCT00055059954.1 UniProtKB/TrEMBL
  ENSSSCT00055059999.1 UniProtKB/TrEMBL
  ENSSSCT00055060011.1 UniProtKB/TrEMBL
  ENSSSCT00060098475.1 UniProtKB/TrEMBL
  ENSSSCT00060098552.1 UniProtKB/TrEMBL
  ENSSSCT00065072073.1 UniProtKB/TrEMBL
  ENSSSCT00065072085.1 UniProtKB/TrEMBL
  ENSSSCT00070030318.1 UniProtKB/TrEMBL
  ENSSSCT00070030320.1 UniProtKB/TrEMBL
  ENSSSCT00070030334.1 UniProtKB/TrEMBL
Gene3D-CATH Glutaredoxin UniProtKB/TrEMBL
InterPro Disulphide_isomerase UniProtKB/TrEMBL
  Prot_disulphide_isomerase UniProtKB/TrEMBL
  Thioredoxin-like_sf UniProtKB/TrEMBL
  Thioredoxin_CS UniProtKB/TrEMBL
  Thioredoxin_domain UniProtKB/TrEMBL
NCBI Gene P4HB ENTREZGENE
PANTHER PROTEIN DISULFIDE ISOMERASE UniProtKB/TrEMBL
  PROTEIN DISULFIDE-ISOMERASE UniProtKB/TrEMBL
Pfam Thioredoxin UniProtKB/TrEMBL
  Thioredoxin_6 UniProtKB/TrEMBL
PRINTS THIOREDOXIN UniProtKB/TrEMBL
PROSITE THIOREDOXIN_1 UniProtKB/TrEMBL
  THIOREDOXIN_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF52833 UniProtKB/TrEMBL
UniProt A0A287AQH8_PIG UniProtKB/TrEMBL
  A0A4X1U6E2_PIG UniProtKB/TrEMBL
  A0A4X1U8U7_PIG UniProtKB/TrEMBL
  A0A4X1UBN3 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2QN66_PIG UniProtKB/TrEMBL
  A0A5G2RDD7_PIG UniProtKB/TrEMBL
  A0A8D0VI39 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4F940_PIG UniProtKB/TrEMBL
  A0A8W4FA53_PIG UniProtKB/TrEMBL
  A0A8W4FBK6_PIG UniProtKB/TrEMBL
  A0A8W4FCR6_PIG UniProtKB/TrEMBL
  A0A8W4FE48_PIG UniProtKB/TrEMBL
  G9F6X8 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:91135 ENTREZGENE