SYT5 (synaptotagmin 5) - Rat Genome Database

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Gene: SYT5 (synaptotagmin 5) Sus scrofa
Analyze
Symbol: SYT5
Name: synaptotagmin 5
RGD ID: 14156746
Description: ENCODES a protein that exhibits calcium ion binding (inferred); calcium-dependent phospholipid binding (inferred); phosphatase activity (inferred); INVOLVED IN dephosphorylation (inferred); peptidyl-tyrosine dephosphorylation (inferred); protein dephosphorylation (inferred); ASSOCIATED WITH hypertrophic cardiomyopathy (ortholog); nemaline myopathy 5 (ortholog); FOUND IN integral component of neuronal dense core vesicle membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: synaptotagmin-5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl659,381,653 - 59,388,960 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1659,381,649 - 59,389,014 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2654,276,396 - 54,283,759 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

References

Genomics

Comparative Map Data
SYT5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl659,381,653 - 59,388,960 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1659,381,649 - 59,389,014 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2654,276,396 - 54,283,759 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SYT5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1955,171,196 - 55,180,289 (-)EnsemblGRCh38hg38GRCh38
GRCh381955,171,196 - 55,180,441 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371955,682,564 - 55,691,657 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361960,376,281 - 60,383,532 (-)NCBINCBI36hg18NCBI36
Build 341960,376,280 - 60,382,727NCBI
Celera1952,725,663 - 52,732,913 (-)NCBI
Cytogenetic Map19q13.42NCBI
HuRef1952,007,463 - 52,014,713 (-)NCBIHuRef
CHM1_11955,678,042 - 55,685,293 (-)NCBICHM1_1
Syt5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3974,542,764 - 4,550,540 (-)NCBIGRCm39mm39
GRCm39 Ensembl74,542,764 - 4,550,540 (-)Ensembl
GRCm3874,539,765 - 4,547,541 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl74,539,765 - 4,547,541 (-)EnsemblGRCm38mm10GRCm38
MGSCv3774,491,367 - 4,498,169 (-)NCBIGRCm37mm9NCBIm37
MGSCv3674,142,852 - 4,149,654 (-)NCBImm8
Celera74,285,056 - 4,291,862 (-)NCBICelera
Cytogenetic Map7A1NCBI
Syt5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2169,277,351 - 69,285,071 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl169,277,351 - 69,285,067 (+)Ensembl
Rnor_6.0172,859,806 - 72,867,934 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl172,860,218 - 72,867,930 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0175,683,287 - 75,691,003 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4168,005,337 - 68,013,052 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1168,083,447 - 68,091,163 (+)NCBI
Celera167,844,074 - 67,850,141 (-)NCBICelera
Cytogenetic Map1q12NCBI
Syt5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555671,018,433 - 1,024,477 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555671,018,433 - 1,024,477 (+)NCBIChiLan1.0ChiLan1.0
SYT5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11960,909,026 - 60,916,436 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1960,909,026 - 60,916,436 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01952,214,261 - 52,221,678 (-)NCBIMhudiblu_PPA_v0panPan3
SYT5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11102,456,767 - 102,463,750 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1102,456,782 - 102,463,749 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1102,513,991 - 102,520,804 (+)NCBI
ROS_Cfam_1.01103,110,511 - 103,117,325 (+)NCBI
ROS_Cfam_1.0 Ensembl1103,109,988 - 103,117,323 (+)Ensembl
UMICH_Zoey_3.11102,747,442 - 102,754,253 (+)NCBI
UNSW_CanFamBas_1.01102,459,003 - 102,465,825 (+)NCBI
UU_Cfam_GSD_1.01103,223,057 - 103,229,871 (+)NCBI
Syt5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093492,102,191 - 2,108,616 (+)NCBI
SpeTri2.0NW_004936886451,400 - 457,093 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC103235294
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1647,768,567 - 47,776,010 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl647,768,545 - 47,774,732 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236668079,678 - 17,212 (-)NCBIVero_WHO_p1.0
Syt5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248322,071,782 - 2,080,680 (+)NCBIHetGla_female_1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system nervous system reproductive system
High
Medium
Low 7 3 23
Below cutoff 8 1 3 1 15 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000028654   ⟹   ENSSSCP00000026568
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl659,381,653 - 59,388,960 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000038975   ⟹   ENSSSCP00000053697
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl659,381,653 - 59,387,818 (-)Ensembl
RefSeq Acc Id: XM_003356063   ⟹   XP_003356111
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1659,381,649 - 59,389,014 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005655967   ⟹   XP_005656024
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1659,381,649 - 59,388,638 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005655968   ⟹   XP_005656025
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1659,381,649 - 59,389,014 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003356111 (Get FASTA)   NCBI Sequence Viewer  
  XP_005656024 (Get FASTA)   NCBI Sequence Viewer  
  XP_005656025 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005656025   ⟸   XM_005655968
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_003356111   ⟸   XM_003356063
- Peptide Label: isoform X1
- UniProtKB: I3LFV7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005656024   ⟸   XM_005655967
- Peptide Label: isoform X1
- UniProtKB: I3LFV7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000026568   ⟸   ENSSSCT00000028654
RefSeq Acc Id: ENSSSCP00000053697   ⟸   ENSSSCT00000038975

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000021843 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00000024567 UniProtKB/TrEMBL
  ENSSSCG00070021187 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000022950 UniProtKB/TrEMBL
  ENSSSCP00000026568 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000053697 UniProtKB/TrEMBL
  ENSSSCP00070035460 UniProtKB/TrEMBL
  ENSSSCP00070035472 UniProtKB/TrEMBL
  ENSSSCP00070035483 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000022455 UniProtKB/TrEMBL
  ENSSSCT00000028654 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000038975 UniProtKB/TrEMBL
  ENSSSCT00070042197 UniProtKB/TrEMBL
  ENSSSCT00070042210 UniProtKB/TrEMBL
  ENSSSCT00070042222 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
  2.60.40.150 UniProtKB/TrEMBL
  3.90.190.10 UniProtKB/TrEMBL
InterPro C2_dom UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/TrEMBL
  FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Prot-tyrosine_phosphatase-like UniProtKB/TrEMBL
  PTPase_domain UniProtKB/TrEMBL
  R-PTP-H UniProtKB/TrEMBL
  Synaptotagmin UniProtKB/TrEMBL
  SYT5 UniProtKB/TrEMBL
  Tyr_Pase_AS UniProtKB/TrEMBL
  Tyr_Pase_cat UniProtKB/TrEMBL
  TYR_PHOSPHATASE_dom UniProtKB/TrEMBL
KEGG Report ssc:100626439 UniProtKB/TrEMBL
NCBI Gene SYT5 ENTREZGENE
PANTHER PTHR10024:SF282 UniProtKB/TrEMBL
  PTHR19134:SF297 UniProtKB/TrEMBL
Pfam fn3 UniProtKB/TrEMBL
  PF00168 UniProtKB/TrEMBL
  Y_phosphatase UniProtKB/TrEMBL
PRINTS C2DOMAIN UniProtKB/TrEMBL
  PRTYPHPHTASE UniProtKB/TrEMBL
  SYNAPTOTAGMN UniProtKB/TrEMBL
PROSITE FN3 UniProtKB/TrEMBL
  PS50004 UniProtKB/TrEMBL
  TYR_PHOSPHATASE_1 UniProtKB/TrEMBL
  TYR_PHOSPHATASE_2 UniProtKB/TrEMBL
  TYR_PHOSPHATASE_PTP UniProtKB/TrEMBL
SMART FN3 UniProtKB/TrEMBL
  PTPc UniProtKB/TrEMBL
  PTPc_motif UniProtKB/TrEMBL
  SM00239 UniProtKB/TrEMBL
Superfamily-SCOP SSF49265 UniProtKB/TrEMBL
  SSF49562 UniProtKB/TrEMBL
  SSF52799 UniProtKB/TrEMBL
UniProt A0A287BAW8_PIG UniProtKB/TrEMBL
  A0A480Y3T9_PIG UniProtKB/TrEMBL
  A0A4X1V2V8_PIG UniProtKB/TrEMBL
  A0A4X1V2X6_PIG UniProtKB/TrEMBL
  A0A4X1V3Y7_PIG UniProtKB/TrEMBL
  A0A5K1V9N9_PIG UniProtKB/TrEMBL
  I3LFV7 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary I3LR36 UniProtKB/TrEMBL
VGNC ID VGNC:93686 ENTREZGENE