PLPBP (pyridoxal phosphate binding protein) - Rat Genome Database

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Gene: PLPBP (pyridoxal phosphate binding protein) Sus scrofa
Analyze
Symbol: PLPBP
Name: pyridoxal phosphate binding protein
RGD ID: 14155260
Description: ENCODES a protein that exhibits pyridoxal phosphate binding (inferred); ASSOCIATED WITH early-onset vitamin B6-dependent epilepsy 1 (ortholog); genetic disease (ortholog); hereditary spastic paraplegia 54 (ortholog); FOUND IN cytosol (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: proline synthase co-transcribed bacterial homolog protein; proline synthetase cotranscribed homolog; PROSC
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1548,624,837 - 48,636,589 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11548,624,790 - 48,636,584 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21555,741,253 - 55,753,025 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (IEA)
membrane  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
PLPBP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1548,624,837 - 48,636,589 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11548,624,790 - 48,636,584 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21555,741,253 - 55,753,025 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PLPBP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38837,762,546 - 37,779,768 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl837,762,595 - 37,779,768 (+)EnsemblGRCh38hg38GRCh38
GRCh37837,620,064 - 37,637,286 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36837,738,833 - 37,756,444 (+)NCBINCBI36Build 36hg18NCBI36
Build 34837,738,832 - 37,756,443NCBI
Celera836,572,050 - 36,589,221 (+)NCBICelera
Cytogenetic Map8p11.23NCBI
HuRef836,154,898 - 36,171,954 (+)NCBIHuRef
CHM1_1837,821,558 - 37,838,742 (+)NCBICHM1_1
T2T-CHM13v2.0838,038,942 - 38,056,164 (+)NCBIT2T-CHM13v2.0
Plpbp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39827,530,801 - 27,546,160 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl827,532,583 - 27,546,160 (+)EnsemblGRCm39 Ensembl
GRCm38827,041,924 - 27,056,132 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl827,042,555 - 27,056,132 (+)EnsemblGRCm38mm10GRCm38
MGSCv37828,153,027 - 28,166,604 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36828,508,471 - 28,522,235 (+)NCBIMGSCv36mm8
Celera828,531,400 - 28,544,944 (+)NCBICelera
Cytogenetic Map8A2NCBI
cM Map815.91NCBI
Plpbp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81671,705,064 - 71,717,726 (-)NCBIGRCr8
mRatBN7.21665,003,292 - 65,014,886 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1665,002,223 - 65,014,886 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1670,286,586 - 70,298,189 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01673,692,919 - 73,704,520 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01668,938,687 - 68,950,281 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01669,164,654 - 69,176,245 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1669,163,577 - 69,176,036 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01668,838,027 - 68,849,618 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41669,330,481 - 69,342,072 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11669,329,617 - 69,342,033 (-)NCBI
Celera1662,922,672 - 62,934,263 (-)NCBICelera
Cytogenetic Map16q12.3NCBI
Plpbp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546313,467,632 - 13,498,640 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546313,467,965 - 13,498,544 (+)NCBIChiLan1.0ChiLan1.0
PLPBP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2756,321,157 - 56,341,824 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1832,038,239 - 32,058,898 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0837,060,599 - 37,081,250 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1834,238,372 - 34,258,846 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl834,238,411 - 34,258,846 (+)Ensemblpanpan1.1panPan2
PLPBP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11627,599,078 - 27,617,902 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1627,599,310 - 27,617,843 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1628,115,774 - 28,134,641 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01629,498,245 - 29,517,118 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1629,498,248 - 29,517,119 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11627,719,694 - 27,738,561 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01628,297,384 - 28,316,235 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01628,336,475 - 28,355,332 (-)NCBIUU_Cfam_GSD_1.0
Plpbp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494350,223,519 - 50,245,081 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367101,216,104 - 1,238,153 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367101,216,142 - 1,236,559 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLPBP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1835,798,067 - 35,817,714 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl835,798,067 - 35,816,054 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660526,187,619 - 6,207,714 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Plpbp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247805,810,342 - 5,838,775 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247805,811,180 - 5,838,411 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PLPBP
374 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 4 1 1 2 1 14 2 1
Low 6 3 2 3 1 9 2 3
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000017234   ⟹   ENSSSCP00000016772
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1548,624,837 - 48,636,589 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000048530   ⟹   ENSSSCP00000052613
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1548,624,837 - 48,636,589 (-)Ensembl
RefSeq Acc Id: XM_003133369   ⟹   XP_003133417
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11548,624,790 - 48,636,584 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013984084   ⟹   XP_013839538
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11548,626,195 - 48,636,473 (-)NCBI
Sequence:
RefSeq Acc Id: XP_003133417   ⟸   XM_003133369
- Peptide Label: isoform X1
- UniProtKB: F1RX84 (UniProtKB/TrEMBL),   A0A8D0ZN99 (UniProtKB/TrEMBL),   A0A8D1K9J2 (UniProtKB/TrEMBL),   A0A8D1CGB9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013839538   ⟸   XM_013984084
- Peptide Label: isoform X2
- UniProtKB: A0A8D0NWG6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000052613   ⟸   ENSSSCT00000048530
RefSeq Acc Id: ENSSSCP00000016772   ⟸   ENSSSCT00000017234
Protein Domains
Alanine racemase N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000015826 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005038542 UniProtKB/TrEMBL
  ENSSSCG00015042589 UniProtKB/TrEMBL
  ENSSSCG00025030250 UniProtKB/TrEMBL
  ENSSSCG00030065980 UniProtKB/TrEMBL
  ENSSSCG00035036195 UniProtKB/TrEMBL
  ENSSSCG00040033916 UniProtKB/TrEMBL
  ENSSSCG00045036686 UniProtKB/TrEMBL
  ENSSSCG00050041843 UniProtKB/TrEMBL
  ENSSSCG00055005982 UniProtKB/TrEMBL
  ENSSSCG00060027429 UniProtKB/TrEMBL
  ENSSSCG00065033123 UniProtKB/TrEMBL
  ENSSSCG00070026919 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000017234 ENTREZGENE
  ENSSSCT00000017234.4 UniProtKB/TrEMBL
  ENSSSCT00000048530.2 UniProtKB/TrEMBL
  ENSSSCT00005061833.1 UniProtKB/TrEMBL
  ENSSSCT00005061870.1 UniProtKB/TrEMBL
  ENSSSCT00005061900.1 UniProtKB/TrEMBL
  ENSSSCT00005061986.1 UniProtKB/TrEMBL
  ENSSSCT00015057062.1 UniProtKB/TrEMBL
  ENSSSCT00015057127.1 UniProtKB/TrEMBL
  ENSSSCT00025041172.1 UniProtKB/TrEMBL
  ENSSSCT00025041266.1 UniProtKB/TrEMBL
  ENSSSCT00025041346.1 UniProtKB/TrEMBL
  ENSSSCT00030092219.1 UniProtKB/TrEMBL
  ENSSSCT00030092240.1 UniProtKB/TrEMBL
  ENSSSCT00035047973.1 UniProtKB/TrEMBL
  ENSSSCT00035047977.1 UniProtKB/TrEMBL
  ENSSSCT00035047980.1 UniProtKB/TrEMBL
  ENSSSCT00040045664.1 UniProtKB/TrEMBL
  ENSSSCT00040045683.1 UniProtKB/TrEMBL
  ENSSSCT00040045706.1 UniProtKB/TrEMBL
  ENSSSCT00045063222.1 UniProtKB/TrEMBL
  ENSSSCT00045063257.1 UniProtKB/TrEMBL
  ENSSSCT00045063299.1 UniProtKB/TrEMBL
  ENSSSCT00050056810.1 UniProtKB/TrEMBL
  ENSSSCT00050056815.1 UniProtKB/TrEMBL
  ENSSSCT00055011678.1 UniProtKB/TrEMBL
  ENSSSCT00055011712.1 UniProtKB/TrEMBL
  ENSSSCT00060037126.1 UniProtKB/TrEMBL
  ENSSSCT00060037139.1 UniProtKB/TrEMBL
  ENSSSCT00065045004.1 UniProtKB/TrEMBL
  ENSSSCT00065045007.1 UniProtKB/TrEMBL
  ENSSSCT00065045011.1 UniProtKB/TrEMBL
  ENSSSCT00070053977.1 UniProtKB/TrEMBL
  ENSSSCT00070053979.1 UniProtKB/TrEMBL
Gene3D-CATH 3.20.20.10 UniProtKB/TrEMBL
InterPro Ala_racemase_N UniProtKB/TrEMBL
  PLP-binding_barrel UniProtKB/TrEMBL
  PyrdxlP_homeostasis UniProtKB/TrEMBL
KEGG Report ssc:100524716 UniProtKB/TrEMBL
NCBI Gene PLPBP ENTREZGENE
PANTHER PTHR10146 UniProtKB/TrEMBL
  PYRIDOXAL PHOSPHATE HOMEOSTASIS PROTEIN UniProtKB/TrEMBL
Pfam Ala_racemase_N UniProtKB/TrEMBL
PIRSF YBL036c_PLPDEIII UniProtKB/TrEMBL
PROSITE UPF0001 UniProtKB/TrEMBL
Superfamily-SCOP SSF51419 UniProtKB/TrEMBL
UniProt A0A4X1VUQ0_PIG UniProtKB/TrEMBL
  A0A4X1VVV5_PIG UniProtKB/TrEMBL
  A0A8D0KC30_PIG UniProtKB/TrEMBL
  A0A8D0LVC7_PIG UniProtKB/TrEMBL
  A0A8D0NWG6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0ZN99 ENTREZGENE
  A0A8D0ZSW3_PIG UniProtKB/TrEMBL
  A0A8D1CGB9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1CT75_PIG UniProtKB/TrEMBL
  A0A8D1E984_PIG UniProtKB/TrEMBL
  A0A8D1K9J2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1K9J4_PIG UniProtKB/TrEMBL
  A0A8D1YBS5_PIG UniProtKB/TrEMBL
  F1RX84 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A287B8H3 UniProtKB/TrEMBL
  A0A8D0ZN99 UniProtKB/TrEMBL
VGNC ID VGNC:104027 ENTREZGENE