FBLN1 (fibulin 1) - Rat Genome Database

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Gene: FBLN1 (fibulin 1) Sus scrofa
Analyze
Symbol: FBLN1
Name: fibulin 1
RGD ID: 14155191
Description: ENCODES a protein that exhibits calcium ion binding (inferred); extracellular matrix structural constituent (inferred); fibrinogen binding (inferred); INVOLVED IN embryo implantation (ortholog); extracellular matrix organization (ortholog); integrin-mediated signaling pathway (ortholog); ASSOCIATED WITH Autosomal Recessive Syndrome of Syndactyly, Undescended Testes and Central Nervous System Defects (ortholog); endometriosis (ortholog); fetal akinesia deformation sequence syndrome 1 (ortholog); FOUND IN extracellular space (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: fibulin-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl53,839,502 - 3,927,183 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.153,839,498 - 3,927,178 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.251,071,068 - 1,158,743 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:37448354  


Genomics

Comparative Map Data
FBLN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl53,839,502 - 3,927,183 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.153,839,498 - 3,927,178 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.251,071,068 - 1,158,743 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FBLN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382245,502,883 - 45,601,135 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2245,502,238 - 45,601,135 (+)EnsemblGRCh38hg38GRCh38
GRCh372245,898,763 - 45,997,015 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362244,277,383 - 44,375,678 (+)NCBINCBI36Build 36hg18NCBI36
Build 342244,219,255 - 44,275,128NCBI
Celera2229,809,689 - 29,909,644 (+)NCBICelera
Cytogenetic Map22q13.31NCBI
HuRef2228,859,953 - 28,942,412 (+)NCBIHuRef
CHM1_12245,857,451 - 45,955,744 (+)NCBICHM1_1
T2T-CHM13v2.02245,987,730 - 46,085,865 (+)NCBIT2T-CHM13v2.0
Fbln1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391585,090,150 - 85,170,495 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1585,090,150 - 85,170,736 (+)EnsemblGRCm39 Ensembl
GRCm381585,205,949 - 85,286,294 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1585,205,949 - 85,286,535 (+)EnsemblGRCm38mm10GRCm38
MGSCv371585,036,438 - 85,116,724 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361585,033,777 - 85,113,422 (+)NCBIMGSCv36mm8
Celera1587,331,933 - 87,412,210 (+)NCBICelera
Cytogenetic Map15E2NCBI
cM Map1540.27NCBI
Fbln1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87118,190,347 - 118,269,965 (+)NCBIGRCr8
mRatBN7.27116,310,582 - 116,390,075 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7116,310,582 - 116,390,075 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7118,061,437 - 118,140,654 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07120,287,178 - 120,366,397 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07120,256,616 - 120,335,836 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07126,096,793 - 126,176,468 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7126,096,793 - 126,176,468 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07125,810,696 - 125,890,371 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47123,208,154 - 123,287,289 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17123,242,385 - 123,321,516 (+)NCBI
Celera7112,608,514 - 112,687,953 (+)NCBICelera
Cytogenetic Map7q34NCBI
Fbln1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541329,837,134 - 29,912,222 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541329,837,134 - 29,911,313 (+)NCBIChiLan1.0ChiLan1.0
FBLN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22355,327,942 - 55,426,786 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12258,026,827 - 58,125,277 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02226,390,379 - 26,488,737 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12244,583,632 - 44,666,696 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2244,582,843 - 44,666,011 (+)Ensemblpanpan1.1panPan2
FBLN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11020,498,097 - 20,564,776 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1020,498,567 - 20,627,836 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1020,418,944 - 20,535,831 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01021,232,145 - 21,315,719 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1021,232,148 - 21,315,848 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11020,951,205 - 21,068,293 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01021,264,132 - 21,382,166 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01021,444,929 - 21,562,250 (-)NCBIUU_Cfam_GSD_1.0
Fbln1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049454,170,186 - 4,231,513 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366294,170,817 - 4,242,103 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366294,170,186 - 4,242,100 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FBLN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11927,962,669 - 28,061,356 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1927,962,642 - 28,061,364 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604597,273,345 - 97,370,894 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fbln1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247524,109,478 - 4,190,066 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247524,109,478 - 4,189,987 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in FBLN1
4130 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 3 1 1 1 3
Low 7 3 3 2 2 22 1 1
Below cutoff 1 1

Sequence


RefSeq Acc Id: ENSSSCT00000000011   ⟹   ENSSSCP00000000011
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl53,839,502 - 3,927,183 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000046398   ⟹   ENSSSCP00000044658
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl53,839,502 - 3,911,709 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000050278   ⟹   ENSSSCP00000032468
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl53,874,426 - 3,911,709 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000072890   ⟹   ENSSSCP00000061381
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl53,839,502 - 3,911,709 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000076272   ⟹   ENSSSCP00000071830
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl53,839,502 - 3,911,709 (-)Ensembl
RefSeq Acc Id: XM_003125955   ⟹   XP_003126003
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.153,839,498 - 3,927,178 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005663736   ⟹   XP_005663793
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.153,874,423 - 3,927,170 (-)NCBI
Sequence:
RefSeq Acc Id: XP_003126003   ⟸   XM_003125955
- Peptide Label: isoform X1
- UniProtKB: F1SM61 (UniProtKB/TrEMBL),   A0A4X1W4U1 (UniProtKB/TrEMBL),   A0A8D1UU10 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005663793   ⟸   XM_005663736
- Peptide Label: isoform X2
- UniProtKB: A0A8D1FL72 (UniProtKB/TrEMBL),   A0A480HZK3 (UniProtKB/TrEMBL),   A0A480HEM9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000032468   ⟸   ENSSSCT00000050278
RefSeq Acc Id: ENSSSCP00000071830   ⟸   ENSSSCT00000076272
RefSeq Acc Id: ENSSSCP00000044658   ⟸   ENSSSCT00000046398
RefSeq Acc Id: ENSSSCP00000000011   ⟸   ENSSSCT00000000011
RefSeq Acc Id: ENSSSCP00000061381   ⟸   ENSSSCT00000072890
Protein Domains
Anaphylatoxin-like   EGF-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000000010 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025060587 UniProtKB/TrEMBL
  ENSSSCG00030052880 UniProtKB/TrEMBL
  ENSSSCG00035012570 UniProtKB/TrEMBL
  ENSSSCG00040062149 UniProtKB/TrEMBL
  ENSSSCG00050014776 UniProtKB/TrEMBL
  ENSSSCG00055029209 UniProtKB/TrEMBL
  ENSSSCG00060024580 UniProtKB/TrEMBL
  ENSSSCG00065043281 UniProtKB/TrEMBL
  ENSSSCG00070028757 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000000011 ENTREZGENE
  ENSSSCT00000000011.5 UniProtKB/TrEMBL
  ENSSSCT00000046398.3 UniProtKB/TrEMBL
  ENSSSCT00000050278.2 UniProtKB/TrEMBL
  ENSSSCT00000072890.2 UniProtKB/TrEMBL
  ENSSSCT00000076272.2 UniProtKB/TrEMBL
  ENSSSCT00025083151.1 UniProtKB/TrEMBL
  ENSSSCT00030073904.1 UniProtKB/TrEMBL
  ENSSSCT00030073983.1 UniProtKB/TrEMBL
  ENSSSCT00030074032.1 UniProtKB/TrEMBL
  ENSSSCT00030074116.1 UniProtKB/TrEMBL
  ENSSSCT00035015878.1 UniProtKB/TrEMBL
  ENSSSCT00035015890.1 UniProtKB/TrEMBL
  ENSSSCT00035015901.1 UniProtKB/TrEMBL
  ENSSSCT00035015907.1 UniProtKB/TrEMBL
  ENSSSCT00040085399.1 UniProtKB/TrEMBL
  ENSSSCT00040085608.1 UniProtKB/TrEMBL
  ENSSSCT00040085890.1 UniProtKB/TrEMBL
  ENSSSCT00040086286.1 UniProtKB/TrEMBL
  ENSSSCT00040086573.1 UniProtKB/TrEMBL
  ENSSSCT00040086732.1 UniProtKB/TrEMBL
  ENSSSCT00040086872.1 UniProtKB/TrEMBL
  ENSSSCT00050020041.1 UniProtKB/TrEMBL
  ENSSSCT00055058191.1 UniProtKB/TrEMBL
  ENSSSCT00055058247.1 UniProtKB/TrEMBL
  ENSSSCT00055058283.1 UniProtKB/TrEMBL
  ENSSSCT00055058317.1 UniProtKB/TrEMBL
  ENSSSCT00055058359.1 UniProtKB/TrEMBL
  ENSSSCT00060033342.1 UniProtKB/TrEMBL
  ENSSSCT00060033350.1 UniProtKB/TrEMBL
  ENSSSCT00065059192.1 UniProtKB/TrEMBL
  ENSSSCT00065059207.1 UniProtKB/TrEMBL
  ENSSSCT00065059216.1 UniProtKB/TrEMBL
  ENSSSCT00065059219.1 UniProtKB/TrEMBL
  ENSSSCT00070057700.1 UniProtKB/TrEMBL
  ENSSSCT00070057708.1 UniProtKB/TrEMBL
  ENSSSCT00070057709.1 UniProtKB/TrEMBL
  ENSSSCT00070057713.1 UniProtKB/TrEMBL
  ENSSSCT00070057718.1 UniProtKB/TrEMBL
  ENSSSCT00070057719.1 UniProtKB/TrEMBL
Gene3D-CATH Laminin UniProtKB/TrEMBL
InterPro Anaphylatoxin/fibulin UniProtKB/TrEMBL
  cEGF UniProtKB/TrEMBL
  EGF-like_Ca-bd_dom UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/TrEMBL
  EGF-type_Asp/Asn_hydroxyl_site UniProtKB/TrEMBL
  EGF_Ca-bd_CS UniProtKB/TrEMBL
  Fibulin-1 UniProtKB/TrEMBL
  Growth_fac_rcpt_cys_sf UniProtKB/TrEMBL
KEGG Report ssc:100519144 UniProtKB/TrEMBL
NCBI Gene FBLN1 ENTREZGENE
PANTHER EGF-LIKE DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  FIBULIN-1 UniProtKB/TrEMBL
  FIBULIN-1 UniProtKB/TrEMBL
  PA14 DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  PTHR24050:SF20 UniProtKB/TrEMBL
Pfam ANATO UniProtKB/TrEMBL
  cEGF UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
PIRSF Fibulin-1 UniProtKB/TrEMBL
PROSITE ANAPHYLATOXIN_1 UniProtKB/TrEMBL
  ANAPHYLATOXIN_2 UniProtKB/TrEMBL
  ASX_HYDROXYL UniProtKB/TrEMBL
  EGF_2 UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
SMART ANATO UniProtKB/TrEMBL
  EGF UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
Superfamily-SCOP EGF/Laminin UniProtKB/TrEMBL
  SSF57184 UniProtKB/TrEMBL
UniProt A0A286ZLN2_PIG UniProtKB/TrEMBL
  A0A287AL89_PIG UniProtKB/TrEMBL
  A0A480HEM9 ENTREZGENE, UniProtKB/TrEMBL
  A0A480HZK3 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1VYX8_PIG UniProtKB/TrEMBL
  A0A4X1W3L6_PIG UniProtKB/TrEMBL
  A0A4X1W3M1_PIG UniProtKB/TrEMBL
  A0A4X1W3M9_PIG UniProtKB/TrEMBL
  A0A4X1W4U1 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1W658_PIG UniProtKB/TrEMBL
  A0A5G2QCT3_PIG UniProtKB/TrEMBL
  A0A5G2R662_PIG UniProtKB/TrEMBL
  A0A8D0XCZ2_PIG UniProtKB/TrEMBL
  A0A8D1CCB9_PIG UniProtKB/TrEMBL
  A0A8D1FFW4_PIG UniProtKB/TrEMBL
  A0A8D1FHE3_PIG UniProtKB/TrEMBL
  A0A8D1FHL0_PIG UniProtKB/TrEMBL
  A0A8D1FHR0_PIG UniProtKB/TrEMBL
  A0A8D1FKI3_PIG UniProtKB/TrEMBL
  A0A8D1FL72 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1FP95_PIG UniProtKB/TrEMBL
  A0A8D1SBQ7_PIG UniProtKB/TrEMBL
  A0A8D1SD29_PIG UniProtKB/TrEMBL
  A0A8D1SJW0_PIG UniProtKB/TrEMBL
  A0A8D1UTP5_PIG UniProtKB/TrEMBL
  A0A8D1UU10 ENTREZGENE, UniProtKB/TrEMBL
  F1SM61 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:103280 ENTREZGENE