ZNF511 (zinc finger protein 511) - Rat Genome Database

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Gene: ZNF511 (zinc finger protein 511) Sus scrofa
Analyze
Symbol: ZNF511
Name: zinc finger protein 511
RGD ID: 14154771
Description: ASSOCIATED WITH distal 10q deletion syndrome (ortholog); genetic disease (ortholog); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14141,253,368 - 141,261,064 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114141,253,373 - 141,263,226 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214153,216,316 - 153,221,501 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712  


Genomics

Comparative Map Data
ZNF511
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14141,253,368 - 141,261,064 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114141,253,373 - 141,263,226 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214153,216,316 - 153,221,501 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF511
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810133,308,914 - 133,313,161 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10133,308,914 - 133,313,162 (+)EnsemblGRCh38hg38GRCh38
GRCh3710135,122,418 - 135,126,665 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3610134,972,413 - 134,976,656 (+)NCBINCBI36Build 36hg18NCBI36
Build 3410135,011,303 - 135,015,547NCBI
Celera10128,390,111 - 128,394,334 (-)NCBICelera
Cytogenetic Map10q26.3NCBI
HuRef10128,668,302 - 128,672,525 (+)NCBIHuRef
CHM1_110135,403,152 - 135,407,395 (+)NCBICHM1_1
T2T-CHM13v2.010134,263,351 - 134,267,598 (+)NCBIT2T-CHM13v2.0
Zfp511
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397139,616,302 - 139,620,519 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7139,616,304 - 139,620,515 (+)EnsemblGRCm39 Ensembl
GRCm387140,036,390 - 140,040,606 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7140,036,391 - 140,040,602 (+)EnsemblGRCm38mm10GRCm38
MGSCv377147,222,290 - 147,226,504 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367139,885,974 - 139,891,921 (+)NCBIMGSCv36mm8
Celera7139,834,484 - 139,838,698 (+)NCBICelera
Cytogenetic Map7F4NCBI
cM Map785.03NCBI
Zfp511
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81204,247,349 - 204,251,754 (+)NCBIGRCr8
mRatBN7.21194,817,697 - 194,822,102 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1194,817,697 - 194,822,102 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1203,178,561 - 203,182,968 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01210,313,703 - 210,318,110 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01202,987,536 - 202,991,943 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01212,359,293 - 212,363,698 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1212,359,177 - 212,363,668 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01219,277,464 - 219,281,869 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41199,821,893 - 199,826,298 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11199,971,947 - 199,976,260 (+)NCBI
Celera1192,495,206 - 192,499,610 (+)NCBICelera
Cytogenetic Map1q41NCBI
Znf511
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547710,932,851 - 10,936,110 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495547710,932,833 - 10,941,562 (+)NCBIChiLan1.0ChiLan1.0
ZNF511
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28145,436,535 - 145,440,777 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110145,441,892 - 145,446,134 (+)NCBINHGRI_mPanPan1
PanPan1.110134,218,665 - 134,225,253 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10134,221,062 - 134,224,957 (+)Ensemblpanpan1.1panPan2
PanPan1.1 Ensembl10134,221,062 - 134,224,957 (+)NCBIpanpan1.1panPan2
ZNF511
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12840,881,819 - 40,885,953 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2840,881,766 - 40,886,090 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2840,937,326 - 40,941,780 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02841,518,407 - 41,522,923 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12841,001,142 - 41,005,596 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02840,990,652 - 40,995,075 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02841,393,279 - 41,397,721 (+)NCBIUU_Cfam_GSD_1.0
Znf511
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244072136,134,661 - 6,138,494 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648619,423,879 - 19,426,339 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648619,422,804 - 19,426,637 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF511
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12653,157,506 - 53,161,756 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2653,157,406 - 53,162,319 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605441,291,183 - 41,295,448 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf511
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473713,432,606 - 13,436,008 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473713,428,543 - 13,436,072 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ZNF511
303 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 2 1
Low 9 4 3 3 1 23 2 3 3
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000011788   ⟹   ENSSSCP00000011486
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl14141,253,368 - 141,258,552 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000042599   ⟹   ENSSSCP00000054622
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl14141,253,428 - 141,258,546 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000083626   ⟹   ENSSSCP00000067968
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl14141,253,368 - 141,261,064 (+)Ensembl
RefSeq Acc Id: XM_001926393   ⟹   XP_001926428
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.114141,253,373 - 141,258,556 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005652421   ⟹   XP_005652478
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.114141,253,373 - 141,258,557 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021073933   ⟹   XP_020929592
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.114141,253,373 - 141,263,226 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021073934   ⟹   XP_020929593
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.114141,253,373 - 141,257,614 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021073935   ⟹   XP_020929594
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.114141,253,373 - 141,263,226 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020929592   ⟸   XM_021073933
- Peptide Label: isoform X1
- UniProtKB: A0A8D1PSC6 (UniProtKB/TrEMBL),   A0A5G2RBH9 (UniProtKB/TrEMBL),   A0A8D1L2K8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020929594   ⟸   XM_021073935
- Peptide Label: isoform X3
- UniProtKB: A0A8D2BHU0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005652478   ⟸   XM_005652421
- Peptide Label: isoform X5
- UniProtKB: A0A480P8V8 (UniProtKB/TrEMBL),   A0A8D1V6R2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_001926428   ⟸   XM_001926393
- Peptide Label: isoform X4
- UniProtKB: F1SCV0 (UniProtKB/TrEMBL),   A0A4X1V566 (UniProtKB/TrEMBL),   A0A8D1V6R2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020929593   ⟸   XM_021073934
- Peptide Label: isoform X2
- UniProtKB: A0A4X1V7H3 (UniProtKB/TrEMBL),   A0A287BDM1 (UniProtKB/TrEMBL),   A0A8D1L2J8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000067968   ⟸   ENSSSCT00000083626
RefSeq Acc Id: ENSSSCP00000011486   ⟸   ENSSSCT00000011788
RefSeq Acc Id: ENSSSCP00000054622   ⟸   ENSSSCT00000042599
Protein Domains
C2H2-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000010774 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025028502 UniProtKB/TrEMBL
  ENSSSCG00030023237 UniProtKB/TrEMBL
  ENSSSCG00035076701 UniProtKB/TrEMBL
  ENSSSCG00040066909 UniProtKB/TrEMBL
  ENSSSCG00045026587 UniProtKB/TrEMBL
  ENSSSCG00050008431 UniProtKB/TrEMBL
  ENSSSCG00055005677 UniProtKB/TrEMBL
  ENSSSCG00060033762 UniProtKB/TrEMBL
  ENSSSCG00065074928 UniProtKB/TrEMBL
  ENSSSCG00070021946 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000011788 ENTREZGENE
  ENSSSCT00000011788.4 UniProtKB/TrEMBL
  ENSSSCT00000042599.3 UniProtKB/TrEMBL
  ENSSSCT00000083626 ENTREZGENE
  ENSSSCT00000083626.2 UniProtKB/TrEMBL
  ENSSSCT00025038675.1 UniProtKB/TrEMBL
  ENSSSCT00025038746.1 UniProtKB/TrEMBL
  ENSSSCT00025038821.1 UniProtKB/TrEMBL
  ENSSSCT00030032277.1 UniProtKB/TrEMBL
  ENSSSCT00030032290.1 UniProtKB/TrEMBL
  ENSSSCT00030032301.1 UniProtKB/TrEMBL
  ENSSSCT00035104344.1 UniProtKB/TrEMBL
  ENSSSCT00035104379.1 UniProtKB/TrEMBL
  ENSSSCT00035104396.1 UniProtKB/TrEMBL
  ENSSSCT00035104409.1 UniProtKB/TrEMBL
  ENSSSCT00040091448.1 UniProtKB/TrEMBL
  ENSSSCT00040091521.1 UniProtKB/TrEMBL
  ENSSSCT00040091587.1 UniProtKB/TrEMBL
  ENSSSCT00045045227.1 UniProtKB/TrEMBL
  ENSSSCT00045045300.1 UniProtKB/TrEMBL
  ENSSSCT00045045377.1 UniProtKB/TrEMBL
  ENSSSCT00050011445.1 UniProtKB/TrEMBL
  ENSSSCT00050011460.1 UniProtKB/TrEMBL
  ENSSSCT00055011044.1 UniProtKB/TrEMBL
  ENSSSCT00055011070.1 UniProtKB/TrEMBL
  ENSSSCT00055011091.1 UniProtKB/TrEMBL
  ENSSSCT00060045799.1 UniProtKB/TrEMBL
  ENSSSCT00060045807.1 UniProtKB/TrEMBL
  ENSSSCT00065103268.1 UniProtKB/TrEMBL
  ENSSSCT00065103274.1 UniProtKB/TrEMBL
  ENSSSCT00065103277.1 UniProtKB/TrEMBL
  ENSSSCT00070043631.1 UniProtKB/TrEMBL
  ENSSSCT00070043637.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro ZNF511 UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
KEGG Report ssc:100152871 UniProtKB/TrEMBL
NCBI Gene ZNF511 ENTREZGENE
PANTHER PTHR21354 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 511 UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
UniProt A0A287BDM1 ENTREZGENE, UniProtKB/TrEMBL
  A0A480P8V8 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1V566 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1V7H3 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2RBH9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0W113_PIG UniProtKB/TrEMBL
  A0A8D0W2Z5_PIG UniProtKB/TrEMBL
  A0A8D0W495_PIG UniProtKB/TrEMBL
  A0A8D1BHH8_PIG UniProtKB/TrEMBL
  A0A8D1BJD1_PIG UniProtKB/TrEMBL
  A0A8D1BJV4_PIG UniProtKB/TrEMBL
  A0A8D1FMJ8_PIG UniProtKB/TrEMBL
  A0A8D1FN99_PIG UniProtKB/TrEMBL
  A0A8D1FR10_PIG UniProtKB/TrEMBL
  A0A8D1L2J8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1L2K8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1PSC6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1V6R2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D2BHU0 ENTREZGENE, UniProtKB/TrEMBL
  F1SCV0 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:104105 ENTREZGENE