HACD4 (3-hydroxyacyl-CoA dehydratase 4)

Gene: HACD4 (3-hydroxyacyl-CoA dehydratase 4) Sus scrofa

Analyze

Symbol:

HACD4

Name:

3-hydroxyacyl-CoA dehydratase 4

RGD ID:

14153177

Description:

ENCODES a protein that exhibits 3-hydroxyacyl-CoA dehydratase activity (inferred); enzyme binding (inferred); lyase activity (inferred); INVOLVED IN fatty acid biosynthetic process (inferred); fatty acid elongation (inferred); sphingolipid biosynthetic process (inferred); ASSOCIATED WITH genetic disease (ortholog); schizophrenia (ortholog); FOUND IN endoplasmic reticulum (inferred); endoplasmic reticulum membrane (inferred); membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

protein tyrosine phosphatase-like A domain containing 2; PTPLAD2; very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	201,886,332 - 201,910,664 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	201,885,874 - 201,910,667 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	225,505,151 - 225,529,448 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

schizophrenia (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

fatty acid biosynthetic process (IEA)

fatty acid elongation (IBA,IEA)

sphingolipid biosynthetic process (IBA,IEA)

very long-chain fatty acid biosynthetic process (IBA,IEA)

Cellular Component

endoplasmic reticulum (IEA)

endoplasmic reticulum membrane (IBA,IEA)

membrane (IEA)

Molecular Function

3-hydroxyacyl-CoA dehydratase activity (IBA,IEA)

enzyme binding (IEA)

lyase activity (IEA)

protein binding (ISO)

very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase activity (IEA)

References

Additional References at PubMed

PMID:14681463	PMID:30032202

Genomics

Comparative Map Data

HACD4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	201,886,332 - 201,910,664 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	201,885,874 - 201,910,667 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	225,505,151 - 225,529,448 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

HACD4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	20,999,509 - 21,031,640 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	20,999,509 - 21,031,640 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	20,999,508 - 21,031,639 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	20,996,365 - 21,021,635 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	9	20,944,643 - 20,969,914 (-)	NCBI		Celera
Cytogenetic Map	9	p21.3	NCBI
HuRef	9	20,969,219 - 20,994,493 (-)	NCBI		HuRef
CHM1_1	9	21,006,146 - 21,031,415 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	9	21,013,385 - 21,045,517 (-)	NCBI		T2T-CHM13v2.0

Hacd4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	88,325,924 - 88,357,175 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	88,314,381 - 88,357,165 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	88,407,687 - 88,438,936 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	88,396,144 - 88,438,928 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	88,058,834 - 88,084,830 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	87,884,161 - 87,910,150 (-)	NCBI		MGSCv36	mm8
Celera	4	86,928,616 - 86,954,626 (-)	NCBI		Celera
Cytogenetic Map	4	C4	NCBI
cM Map	4	41.73	NCBI

Hacd4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	107,935,514 - 107,961,271 (-)	NCBI		GRCr8
mRatBN7.2	5	102,887,597 - 102,915,376 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	102,887,588 - 102,915,338 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	105,251,369 - 105,276,865 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	107,041,826 - 107,067,328 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	107,101,873 - 107,127,890 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	106,728,401 - 106,758,068 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	106,732,513 - 106,758,032 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	110,713,012 - 110,738,726 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	107,706,535 - 107,732,323 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	107,711,760 - 107,737,538 (-)	NCBI
Celera	5	100,197,158 - 100,222,837 (+)	NCBI		Celera
Cytogenetic Map	5	q32	NCBI

Hacd4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955434	23,235,928 - 23,261,788 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955434	23,235,928 - 23,261,288 (-)	NCBI	ChiLan1.0	ChiLan1.0

HACD4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	103,516,228 - 103,543,707 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	103,521,244 - 103,547,140 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	20,811,857 - 20,839,900 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	21,467,332 - 21,495,350 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	21,470,670 - 21,495,350 (-)	Ensembl	panpan1.1		panPan2

HACD4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	11	40,585,793 - 40,616,232 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	11	40,586,076 - 40,616,007 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	11	39,248,297 - 39,278,782 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	11	41,527,707 - 41,558,197 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	11	41,527,714 - 41,558,145 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	11	40,219,861 - 40,250,344 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	11	40,008,173 - 40,038,644 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	11	40,643,877 - 40,674,371 (-)	NCBI		UU_Cfam_GSD_1.0

Hacd4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	154,974,131 - 155,007,649 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936652	2,643,712 - 2,677,207 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936652	2,647,639 - 2,677,156 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

Hacd4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624736	25,005,329 - 25,025,611 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624736	25,005,040 - 25,028,163 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in HACD4
423 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	hemolymphoid system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system
High
Medium	5			1				2	2
Low	5	3	3	4	2	23	2	1	1
Below cutoff		1

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003121884	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021063076	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021063085	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK235492	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK391463	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU407268	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01075215	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSSCT00000040074 ⟹ ENSSSCP00000040121

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	1	201,886,332 - 201,910,664 (+)	Ensembl

RefSeq Acc Id:

XM_003121884 ⟹ XP_003121932

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	1	201,886,336 - 201,910,667 (+)	NCBI

Sequence:

show sequence

TTTTTTTGTAAATTGCTCAGTGTGGAGAGGCCCCGCCCTTCCGCACTCAGCCATGGGGCCACCC
CTACCGCGCTCTCTGGCGGGTGTTCCTTCCCGGACGGCGCTGGAGGGCTTGGCAACGGCGGCCC
ATGGGACCCGTGGAGCTGCCCGCCTGGCTGCAGCCCAGGTATAGGAAGAATGCCTATCTTTTCG
TCTATTACTTACTCCAGTTCTGTGGCCACTCGTGGATATTTACAAATATGACAGTCAGATTCTT
TTCATTTGGAAAAGATTCAATGGTTGACACTTTTTATGCAATTGGACTGGTGATGCGACTTTGC
CAATTGATTTCCCTGTTGGAGTTGCTGCACATATATGTTGGCATTGAATCAAACCATCTTCTTC
CTAGGTTTCTACAGCTCACCGAGAGAATAATCATCCTCTTTGTGGTGATCACCAGTCAAGAGGA
AGTCCAAGAGAAATATGTTGTGTGTGTTTTATTCATCTTTTGGAATCTATTGGATATGGTTAGG
TACACTTACAGCATGTTATCGGTCATAGGAATATCCTATGTTGTCTTGACATGGCTCAGTCAAA
CACTTTGGATGCCAATTTATCCTTTGTGTGTTCTTGCTGAAGCATTTGCCGTCTATCAGTCACT
GCCTTATTTTGAATCATTTGGCACTTACTCCACAAAGCTGCCCTTTGACTTATCCATTTATTTC
CCATATGTGCTGAAAATATATGTTATAATGCTCTTTATAGGTATGTATTTTACCTACAGTCATC
TTTACTCAGAAAGAAGAGACATCCTCAAAGTCTTTCCCGTTAAAAAGAAGAAAATATGAAGCAT
GGCAAACTGATGGGACATCAGAAAAGAGAGGCTTTTGGATTCAACTATAGTAAACATGACATAG
GAAGTATTCTGGTGGAAAAATACCTGGTATTTAACCAAAATCCATGATGTGAAATAATTGCACT
CCTCCTCACAGTGGTCTATATTTCTCACAGTGGTCTATATTTCTCACACATTGTTTTTAGTATG
TATACTCCTCACAAACCTGTTTCACCAAAGCTGTGGATTGTATACATGTTAAGTGTATATTGTG
CGAAAGCCTGATTATTTTTCTGTAAAGCTAATCAGAAATAGAATTTTTAACTGGAATAGATTCA
TTTAAACCAAGAAACCAAAGTTGGTAACCTGAATTACATATATTTCTTTTCACTTCTGAATTCC
CAAGTAGCAGCTAGTCTGTGGGAGGGGAGCGATGTGAAATATGTTCTGCAATTTTTTAGAATAA
CCTATTTTATAGACAGATGTCACTTTTCCAGAATTAATACCCATCCTAAACAGAAGACACACTT
AGAAAATTAAATATTCTTCCAAATCCTGAAAGAGTACTTGTTAATGTTACACAAGTTATTTGGG
CTTTGATGGCTTAAAAGAGGACCCTGATGAAAACAGAATAGAACTTTGGTAAATACTGCCCCAT
ATTCCTTTTAAAAAAATTAATCAAGCTGTGTACATACCTTACAGGATGATAGAATGTACAAAAA
TATAGTAAATCAGAGTTCCCATTGTGGCTCAGTGGTAACAAACTCAACTAGTATTTATGAGGAT
GCAGGTTCAATCCCTGGCTTTGCTCGGTGGGTTAAGGATGATTGTTGCCGTGTGCTGTGGCCTG
GAGCTGTGGTGTGGGTCACAGATGTGGCCTAGATCCCGCATTGCTGTGGCGGTGGCTAGGCCAT
CAGCTGTAGCTCTGAGTGGACCCTTAGCCTGGAACTTCCATATGCTGTGGGTGGCCCTAAGAAG
AAGAAAAAAAAAAAATCAAGTCCTACTGATTTTTTGATTGGATTGTTTTTTAATGTTGACTTGT
ATGGACCGTTAGTAAATAGTTTGGATTTTAACCCCTTGCTGTCACATCATTTGCAAAAGAAGCA
CTTATTTAAAGGAAGCAAGAAAGTTGAGAACTAGTAATGCTTCAGATTATTTATTATTGAATTA
TTGTTAATTGCTTTAAGTCACATGTAAGTCTTTACAGTTTTGAAAAGTGCTCATTTCTTTGAAG
ATCTAAAATATATGTGAATAATTGACGAATAGAATAATTTTTCTACTTGAGTATATCATTCACT
TTTCTTGAGAGAATCATAGACCCTTATTATCCAATAACTATATAAAAAGGGTACTAAATATTTT
GTGACAGTAAGAACCAGGTAATAAAAATGTAATTATAAAAAAAATGGGTAGGAGTTCCTGTTGT
GGCTCAGTGGTAATGAACTAGTATCCATGAGGATGCAAGGTTCAATCCCTGGACTCGTTCAGTG
GGTTAAGGATCCAGCATTGTCATGAGCTGTGGTGTTGGCTGCAGATGCAGCTTGGATCCCGCGT
TGCTGTGGCTGTGATGTAGGCCAGCAGTTATAGCTATGATTCGACCCCTAGCCTGGGAACTTCC
ATTTGCCACGTGTGCTGCCCTAAAAAAGCAAAAAAAAAAATAAAAACAAACCAAAAAATCACAA
AAAACTGGATAATCTTACTTCCACTAAATAAAACATTTGATAAAAAGCAATTGAATATTAATGA
TAATTAATATCTTTATAAATTTCATATATTTGGTATTTTAAAATAAGTATTAAAATTATCCTTT
TAAGAAGCTACA

hide sequence

RefSeq Acc Id:

XM_021063076 ⟹ XP_020918735

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	1	201,885,874 - 201,910,667 (+)	NCBI

Sequence:

show sequence

CACCACGTGAATAAAAGAATCAGTGAAGGCCGTGGGGAGATGAGAGGCAAAGGATGTCTGATAC
TAGCAGAATCAGGCCCCTTGGCTGAAAAGGTGTTAGGGAAGGCTCACAACTTTCCTTGATGCAT
GGCTCTGGCTCTGACAGGTGAGGGTACTAATTAGGAGCGGCACACACCAGGAGCCCATGCATCC
CAGGAGGCTTTGGGATGGCCTGACTGCACGCTTTGGAGGGTCAGAGTTCAGGGTCCATTCACAT
TCGCGAGGTTGCAACGGGGTCTGAACCCGAAGATTAGAAAGCCGGGTATAGGAAGAATGCCTAT
CTTTTCGTCTATTACTTACTCCAGTTCTGTGGCCACTCGTGGATATTTACAAATATGACAGTCA
GATTCTTTTCATTTGGAAAAGATTCAATGGTTGACACTTTTTATGCAATTGGACTGGTGATGCG
ACTTTGCCAATTGATTTCCCTGTTGGAGTTGCTGCACATATATGTTGGCATTGAATCAAACCAT
CTTCTTCCTAGGTTTCTACAGCTCACCGAGAGAATAATCATCCTCTTTGTGGTGATCACCAGTC
AAGAGGAAGTCCAAGAGAAATATGTTGTGTGTGTTTTATTCATCTTTTGGAATCTATTGGATAT
GGTTAGGTACACTTACAGCATGTTATCGGTCATAGGAATATCCTATGTTGTCTTGACATGGCTC
AGTCAAACACTTTGGATGCCAATTTATCCTTTGTGTGTTCTTGCTGAAGCATTTGCCGTCTATC
AGTCACTGCCTTATTTTGAATCATTTGGCACTTACTCCACAAAGCTGCCCTTTGACTTATCCAT
TTATTTCCCATATGTGCTGAAAATATATGTTATAATGCTCTTTATAGGTATGTATTTTACCTAC
AGTCATCTTTACTCAGAAAGAAGAGACATCCTCAAAGTCTTTCCCGTTAAAAAGAAGAAAATAT
GAAGCATGGCAAACTGATGGGACATCAGAAAAGAGAGGCTTTTGGATTCAACTATAGTAAACAT
GACATAGGAAGTATTCTGGTGGAAAAATACCTGGTATTTAACCAAAATCCATGATGTGAAATAA
TTGCACTCCTCCTCACAGTGGTCTATATTTCTCACAGTGGTCTATATTTCTCACACATTGTTTT
TAGTATGTATACTCCTCACAAACCTGTTTCACCAAAGCTGTGGATTGTATACATGTTAAGTGTA
TATTGTGCGAAAGCCTGATTATTTTTCTGTAAAGCTAATCAGAAATAGAATTTTTAACTGGAAT
AGATTCATTTAAACCAAGAAACCAAAGTTGGTAACCTGAATTACATATATTTCTTTTCACTTCT
GAATTCCCAAGTAGCAGCTAGTCTGTGGGAGGGGAGCGATGTGAAATATGTTCTGCAATTTTTT
AGAATAACCTATTTTATAGACAGATGTCACTTTTCCAGAATTAATACCCATCCTAAACAGAAGA
CACACTTAGAAAATTAAATATTCTTCCAAATCCTGAAAGAGTACTTGTTAATGTTACACAAGTT
ATTTGGGCTTTGATGGCTTAAAAGAGGACCCTGATGAAAACAGAATAGAACTTTGGTAAATACT
GCCCCATATTCCTTTTAAAAAAATTAATCAAGCTGTGTACATACCTTACAGGATGATAGAATGT
ACAAAAATATAGTAAATCAGAGTTCCCATTGTGGCTCAGTGGTAACAAACTCAACTAGTATTTA
TGAGGATGCAGGTTCAATCCCTGGCTTTGCTCGGTGGGTTAAGGATGATTGTTGCCGTGTGCTG
TGGCCTGGAGCTGTGGTGTGGGTCACAGATGTGGCCTAGATCCCGCATTGCTGTGGCGGTGGCT
AGGCCATCAGCTGTAGCTCTGAGTGGACCCTTAGCCTGGAACTTCCATATGCTGTGGGTGGCCC
TAAGAAGAAGAAAAAAAAAAAATCAAGTCCTACTGATTTTTTGATTGGATTGTTTTTTAATGTT
GACTTGTATGGACCGTTAGTAAATAGTTTGGATTTTAACCCCTTGCTGTCACATCATTTGCAAA
AGAAGCACTTATTTAAAGGAAGCAAGAAAGTTGAGAACTAGTAATGCTTCAGATTATTTATTAT
TGAATTATTGTTAATTGCTTTAAGTCACATGTAAGTCTTTACAGTTTTGAAAAGTGCTCATTTC
TTTGAAGATCTAAAATATATGTGAATAATTGACGAATAGAATAATTTTTCTACTTGAGTATATC
ATTCACTTTTCTTGAGAGAATCATAGACCCTTATTATCCAATAACTATATAAAAAGGGTACTAA
ATATTTTGTGACAGTAAGAACCAGGTAATAAAAATGTAATTATAAAAAAAATGGGTAGGAGTTC
CTGTTGTGGCTCAGTGGTAATGAACTAGTATCCATGAGGATGCAAGGTTCAATCCCTGGACTCG
TTCAGTGGGTTAAGGATCCAGCATTGTCATGAGCTGTGGTGTTGGCTGCAGATGCAGCTTGGAT
CCCGCGTTGCTGTGGCTGTGATGTAGGCCAGCAGTTATAGCTATGATTCGACCCCTAGCCTGGG
AACTTCCATTTGCCACGTGTGCTGCCCTAAAAAAGCAAAAAAAAAAATAAAAACAAACCAAAAA
ATCACAAAAAACTGGATAATCTTACTTCCACTAAATAAAACATTTGATAAAAAGCAATTGAATA
TTAATGATAATTAATATCTTTATAAATTTCATATATTTGGTATTTTAAAATAAGTATTAAAATT
ATCCTTTTAAGAAGCTACA

hide sequence

RefSeq Acc Id:

XM_021063085 ⟹ XP_020918744

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	1	201,886,347 - 201,910,667 (+)	NCBI

Sequence:

show sequence

ATTGCTCAGTGTGGAGAGGCCCCGCCCTTCCGCACTCAGCCATGGGGCCACCCCTACCGCGCTC
TCTGGCGGGTGTTCCTTCCCGGACGGCGCTGGAGGGCTTGGCAACGGCGGCCCATGGGACCCGT
GGAGCTGCCCGCCTGGCTGCAGCCCAGGTATAGGAAGAATGCCTATCTTTTCGTCTATTACTTA
CTCCAGTTCTGTGGCCACTCGTGGATATTTACAAATATGACAGTCAGATTCTTTTCATTTGGAA
AAGATTCAATGGTTGACACTTTTTATGCAATTGGACTGGTGATGCGACTTTGCCAATTGATTTC
CCTGTTGGAGTTGCTGCACATATATGTTGGCATTGAATCAAACCATCTTCTTCCTAGGTTTCTA
CAGCTCACCGAGAGAATAATCATCCTCTTTGTGGTGATCACCAGTCAAGAGGAAGTCCAAGAGA
AATATGTTGTGTGTGTTTTATTCATCTTTTGGAATCTATTGGATATGGTTAGGTACACTTACAG
CATGTTATCGGTCATAGGAATATCCTATGTTGTCTTGACATGGCTCAGTCAAACACTTTGGATG
CCAATTTATCCTTTGTGTGTTCTTGCTGAAGGTATGTATTTTACCTACAGTCATCTTTACTCAG
AAAGAAGAGACATCCTCAAAGTCTTTCCCGTTAAAAAGAAGAAAATATGAAGCATGGCAAACTG
ATGGGACATCAGAAAAGAGAGGCTTTTGGATTCAACTATAGTAAACATGACATAGGAAGTATTC
TGGTGGAAAAATACCTGGTATTTAACCAAAATCCATGATGTGAAATAATTGCACTCCTCCTCAC
AGTGGTCTATATTTCTCACAGTGGTCTATATTTCTCACACATTGTTTTTAGTATGTATACTCCT
CACAAACCTGTTTCACCAAAGCTGTGGATTGTATACATGTTAAGTGTATATTGTGCGAAAGCCT
GATTATTTTTCTGTAAAGCTAATCAGAAATAGAATTTTTAACTGGAATAGATTCATTTAAACCA
AGAAACCAAAGTTGGTAACCTGAATTACATATATTTCTTTTCACTTCTGAATTCCCAAGTAGCA
GCTAGTCTGTGGGAGGGGAGCGATGTGAAATATGTTCTGCAATTTTTTAGAATAACCTATTTTA
TAGACAGATGTCACTTTTCCAGAATTAATACCCATCCTAAACAGAAGACACACTTAGAAAATTA
AATATTCTTCCAAATCCTGAAAGAGTACTTGTTAATGTTACACAAGTTATTTGGGCTTTGATGG
CTTAAAAGAGGACCCTGATGAAAACAGAATAGAACTTTGGTAAATACTGCCCCATATTCCTTTT
AAAAAAATTAATCAAGCTGTGTACATACCTTACAGGATGATAGAATGTACAAAAATATAGTAAA
TCAGAGTTCCCATTGTGGCTCAGTGGTAACAAACTCAACTAGTATTTATGAGGATGCAGGTTCA
ATCCCTGGCTTTGCTCGGTGGGTTAAGGATGATTGTTGCCGTGTGCTGTGGCCTGGAGCTGTGG
TGTGGGTCACAGATGTGGCCTAGATCCCGCATTGCTGTGGCGGTGGCTAGGCCATCAGCTGTAG
CTCTGAGTGGACCCTTAGCCTGGAACTTCCATATGCTGTGGGTGGCCCTAAGAAGAAGAAAAAA
AAAAAATCAAGTCCTACTGATTTTTTGATTGGATTGTTTTTTAATGTTGACTTGTATGGACCGT
TAGTAAATAGTTTGGATTTTAACCCCTTGCTGTCACATCATTTGCAAAAGAAGCACTTATTTAA
AGGAAGCAAGAAAGTTGAGAACTAGTAATGCTTCAGATTATTTATTATTGAATTATTGTTAATT
GCTTTAAGTCACATGTAAGTCTTTACAGTTTTGAAAAGTGCTCATTTCTTTGAAGATCTAAAAT
ATATGTGAATAATTGACGAATAGAATAATTTTTCTACTTGAGTATATCATTCACTTTTCTTGAG
AGAATCATAGACCCTTATTATCCAATAACTATATAAAAAGGGTACTAAATATTTTGTGACAGTA
AGAACCAGGTAATAAAAATGTAATTATAAAAAAAATGGGTAGGAGTTCCTGTTGTGGCTCAGTG
GTAATGAACTAGTATCCATGAGGATGCAAGGTTCAATCCCTGGACTCGTTCAGTGGGTTAAGGA
TCCAGCATTGTCATGAGCTGTGGTGTTGGCTGCAGATGCAGCTTGGATCCCGCGTTGCTGTGGC
TGTGATGTAGGCCAGCAGTTATAGCTATGATTCGACCCCTAGCCTGGGAACTTCCATTTGCCAC
GTGTGCTGCCCTAAAAAAGCAAAAAAAAAAATAAAAACAAACCAAAAAATCACAAAAAACTGGA
TAATCTTACTTCCACTAAATAAAACATTTGATAAAAAGCAATTGAATATTAATGATAATTAATA
TCTTTATAAATTTCATATATTTGGTATTTTAAAATAAGTATTAAAATTATCCTTTTAAGAAGCT
ACA

hide sequence

Protein Sequences


Protein RefSeqs	XP_003121932	(Get FASTA)	NCBI Sequence Viewer
	XP_020918735	(Get FASTA)	NCBI Sequence Viewer
	XP_020918744	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000040121
	ENSSSCP00000040121.1
	ENSSSCP00005020865.1
	ENSSSCP00015015345.1
	ENSSSCP00025036121.1
	ENSSSCP00025036185.1
	ENSSSCP00025036271.1
	ENSSSCP00030034230.1
	ENSSSCP00035009644.1
	ENSSSCP00035009645.1
	ENSSSCP00035009650.1
	ENSSSCP00040041847.1
	ENSSSCP00040041911.1
	ENSSSCP00045013495.1
	ENSSSCP00050037846.1
	ENSSSCP00050037847.1
	ENSSSCP00055010459.1
	ENSSSCP00055010491.1
	ENSSSCP00060006906.1
	ENSSSCP00065033020.1
	ENSSSCP00070052037.1
	ENSSSCP00070052038.1

RefSeq Acc Id:	XP_020918735 ⟸ XM_021063076
- Peptide Label:	isoform X2
- UniProtKB:	A0A8D0SZD7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTVRFFSFGKDSMVDTFYAIGLVMRLCQLISLLELLHIYVGIESNHLLPRFLQLTERIIILFVV ITSQEEVQEKYVVCVLFIFWNLLDMVRYTYSMLSVIGISYVVLTWLSQTLWMPIYPLCVLAEAF AVYQSLPYFESFGTYSTKLPFDLSIYFPYVLKIYVIMLFIGMYFTYSHLYSERRDILKVFPVKK KKI hide sequence

RefSeq Acc Id:	XP_003121932 ⟸ XM_003121884
- Peptide Label:	isoform X1
- UniProtKB:	A0A287A8K6 (UniProtKB/TrEMBL), A0A4X1W6I8 (UniProtKB/TrEMBL), A0A8D1FQZ2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGPVELPAWLQPRYRKNAYLFVYYLLQFCGHSWIFTNMTVRFFSFGKDSMVDTFYAIGLVMRLC QLISLLELLHIYVGIESNHLLPRFLQLTERIIILFVVITSQEEVQEKYVVCVLFIFWNLLDMVR YTYSMLSVIGISYVVLTWLSQTLWMPIYPLCVLAEAFAVYQSLPYFESFGTYSTKLPFDLSIYF PYVLKIYVIMLFIGMYFTYSHLYSERRDILKVFPVKKKKI hide sequence

RefSeq Acc Id:	XP_020918744 ⟸ XM_021063085
- Peptide Label:	isoform X3
- UniProtKB:	F1SNG5 (UniProtKB/TrEMBL), A0A8D1FQZ2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGPVELPAWLQPRYRKNAYLFVYYLLQFCGHSWIFTNMTVRFFSFGKDSMVDTFYAIGLVMRLC QLISLLELLHIYVGIESNHLLPRFLQLTERIIILFVVITSQEEVQEKYVVCVLFIFWNLLDMVR YTYSMLSVIGISYVVLTWLSQTLWMPIYPLCVLAEGMYFTYSHLYSERRDILKVFPVKKKKI hide sequence

RefSeq Acc Id:

ENSSSCP00000040121 ⟸ ENSSSCT00000040074

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000005164	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00005021689	UniProtKB/TrEMBL
	ENSSSCG00015029171	UniProtKB/TrEMBL
	ENSSSCG00025060697	UniProtKB/TrEMBL
	ENSSSCG00030053688	UniProtKB/TrEMBL
	ENSSSCG00035019669	UniProtKB/TrEMBL
	ENSSSCG00040069208	UniProtKB/TrEMBL
	ENSSSCG00045011628	UniProtKB/TrEMBL
	ENSSSCG00050064854	UniProtKB/TrEMBL
	ENSSSCG00055006875	UniProtKB/TrEMBL
	ENSSSCG00060013210	UniProtKB/TrEMBL
	ENSSSCG00065055479	UniProtKB/TrEMBL
	ENSSSCG00070030324	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000040074	ENTREZGENE
	ENSSSCT00000040074.3	UniProtKB/TrEMBL
	ENSSSCT00005034230.1	UniProtKB/TrEMBL
	ENSSSCT00015038665.1	UniProtKB/TrEMBL
	ENSSSCT00025083091.1	UniProtKB/TrEMBL
	ENSSSCT00025083211.1	UniProtKB/TrEMBL
	ENSSSCT00025083366.1	UniProtKB/TrEMBL
	ENSSSCT00030074843.1	UniProtKB/TrEMBL
	ENSSSCT00035025491.1	UniProtKB/TrEMBL
	ENSSSCT00035025495.1	UniProtKB/TrEMBL
	ENSSSCT00035025502.1	UniProtKB/TrEMBL
	ENSSSCT00040094707.1	UniProtKB/TrEMBL
	ENSSSCT00040094794.1	UniProtKB/TrEMBL
	ENSSSCT00045019690.1	UniProtKB/TrEMBL
	ENSSSCT00050088293.1	UniProtKB/TrEMBL
	ENSSSCT00050088296.1	UniProtKB/TrEMBL
	ENSSSCT00055013304.1	UniProtKB/TrEMBL
	ENSSSCT00055013341.1	UniProtKB/TrEMBL
	ENSSSCT00060017361.1	UniProtKB/TrEMBL
	ENSSSCT00065075926.1	UniProtKB/TrEMBL
	ENSSSCT00070061045.1	UniProtKB/TrEMBL
	ENSSSCT00070061046.1	UniProtKB/TrEMBL
InterPro	Tyr_Pase-like_PTPLA	UniProtKB/TrEMBL
NCBI Gene	HACD4	ENTREZGENE
PANTHER	PTHR11035	UniProtKB/TrEMBL
	VERY-LONG-CHAIN (3R)-3-HYDROXYACYL-COA DEHYDRATASE 4	UniProtKB/TrEMBL
Pfam	PTPLA	UniProtKB/TrEMBL
UniProt	A0A287A8K6	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1W6I8	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1WC79_PIG	UniProtKB/TrEMBL
	A0A8D0J7K4_PIG	UniProtKB/TrEMBL
	A0A8D0SZD7	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1FQZ2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1FUR8_PIG	UniProtKB/TrEMBL
	F1SNG5	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:88768	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar