SOAT2 (sterol O-acyltransferase 2) - Rat Genome Database

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Gene: SOAT2 (sterol O-acyltransferase 2) Sus scrofa
Analyze
Symbol: SOAT2
Name: sterol O-acyltransferase 2
RGD ID: 14153067
Description: ENCODES a protein that exhibits sterol O-acyltransferase activity (ortholog); INVOLVED IN cholesterol metabolic process (ortholog); response to nutrient (ortholog); PARTICIPATES IN kidney failure pathway; ASSOCIATED WITH arteriosclerosis (ortholog); celiac disease (ortholog); cholelithiasis (ortholog); FOUND IN endoplasmic reticulum (ortholog); membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl518,358,673 - 18,371,264 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1518,358,941 - 18,371,262 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2518,773,838 - 18,786,099 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
SOAT2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl518,358,673 - 18,371,264 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1518,358,941 - 18,371,262 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2518,773,838 - 18,786,099 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SOAT2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1253,103,486 - 53,124,535 (+)EnsemblGRCh38hg38GRCh38
GRCh381253,103,486 - 53,124,535 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371253,497,270 - 53,518,319 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361251,783,541 - 51,804,590 (+)NCBINCBI36hg18NCBI36
Build 341251,783,581 - 51,804,589NCBI
Celera1253,145,169 - 53,166,217 (+)NCBI
Cytogenetic Map12q13.13NCBI
HuRef1250,540,306 - 50,561,441 (+)NCBIHuRef
CHM1_11253,463,699 - 53,484,782 (+)NCBICHM1_1
Soat2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3915102,058,853 - 102,071,871 (+)NCBIGRCm39mm39
GRCm39 Ensembl15102,058,961 - 102,071,904 (+)Ensembl
GRCm3815102,150,415 - 102,163,469 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl15102,150,526 - 102,163,469 (+)EnsemblGRCm38mm10GRCm38
MGSCv3715101,981,006 - 101,993,867 (+)NCBIGRCm37mm9NCBIm37
MGSCv3615101,978,609 - 101,991,470 (+)NCBImm8
Celera15104,305,508 - 104,318,364 (+)NCBICelera
Cytogenetic Map15F2NCBI
cM Map1557.33NCBI
Soat2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.27133,281,818 - 133,294,915 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl7133,281,818 - 133,294,915 (+)Ensembl
Rnor_6.07143,754,892 - 143,767,989 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7143,754,892 - 143,767,989 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07141,552,394 - 141,565,491 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47140,890,902 - 140,903,999 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.17140,967,338 - 140,980,436 (+)NCBI
Celera7129,716,600 - 129,729,697 (+)NCBICelera
Cytogenetic Map7q36NCBI
Soat2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955458382,892 - 394,749 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955458383,123 - 394,003 (+)NCBIChiLan1.0ChiLan1.0
SOAT2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11236,413,954 - 36,434,074 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1236,413,954 - 36,434,074 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01235,632,018 - 35,653,227 (-)NCBIMhudiblu_PPA_v0panPan3
SOAT2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1272,053,063 - 2,062,773 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl272,053,067 - 2,062,329 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2744,186,356 - 44,196,074 (+)NCBI
ROS_Cfam_1.0272,057,164 - 2,066,887 (-)NCBI
UMICH_Zoey_3.1272,074,438 - 2,083,937 (-)NCBI
UNSW_CanFamBas_1.0272,060,773 - 2,070,480 (-)NCBI
UU_Cfam_GSD_1.02744,585,437 - 44,595,161 (+)NCBI
Soat2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494562,733,617 - 62,745,065 (-)NCBI
SpeTri2.0NW_00493651210,420,847 - 10,430,813 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SOAT2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11149,214,295 - 49,228,268 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1149,215,034 - 49,228,244 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666037196,837,935 - 196,852,282 (-)NCBIVero_WHO_p1.0
Soat2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046249041,160,275 - 1,170,249 (+)NCBIHetGla_female_1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system endocrine system hemolymphoid system musculoskeletal system nervous system reproductive system respiratory system
High
Medium
Low 8
Below cutoff 2 1 1 1 8 2 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000000279   ⟹   ENSSSCP00000000275
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl518,358,673 - 18,371,264 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000043738   ⟹   ENSSSCP00000040905
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl518,359,058 - 18,371,258 (+)Ensembl
RefSeq Acc Id: XM_003126184   ⟹   XP_003126232
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1518,359,018 - 18,371,262 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021091697   ⟹   XP_020947356
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1518,358,941 - 18,371,262 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003126232 (Get FASTA)   NCBI Sequence Viewer  
  XP_020947356 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_020947356   ⟸   XM_021091697
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_003126232   ⟸   XM_003126184
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSSSCP00000040905   ⟸   ENSSSCT00000043738
RefSeq Acc Id: ENSSSCP00000000275   ⟸   ENSSSCT00000000279


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000000260 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070030231 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000000275 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000040905 UniProtKB/TrEMBL
  ENSSSCP00070051841 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000000279 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000043738 UniProtKB/TrEMBL
  ENSSSCT00070060833 UniProtKB/TrEMBL
InterPro MBOAT_fam UniProtKB/TrEMBL
  Oat_ACAT_DAG_ARE UniProtKB/TrEMBL
  Sterol_acyltranf_meta UniProtKB/TrEMBL
NCBI Gene SOAT2 ENTREZGENE
PANTHER PTHR10408 UniProtKB/TrEMBL
Pfam MBOAT UniProtKB/TrEMBL
PIRSF Oat_ACAT_DAG_ARE UniProtKB/TrEMBL
  Sterol_acyltranf_ACAT UniProtKB/TrEMBL
UniProt A0A287AAD7_PIG UniProtKB/TrEMBL
  A0A4X1WBH7_PIG UniProtKB/TrEMBL
  F1SGE4_PIG UniProtKB/TrEMBL
VGNC ID VGNC:93328 ENTREZGENE