NDUFB9 (NADH:ubiquinone oxidoreductase subunit B9) - Rat Genome Database

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Gene: NDUFB9 (NADH:ubiquinone oxidoreductase subunit B9) Sus scrofa
Analyze
Symbol: NDUFB9
Name: NADH:ubiquinone oxidoreductase subunit B9
RGD ID: 14153059
Description: INVOLVED IN mitochondrial electron transport, NADH to ubiquinone (inferred); mitochondrial respiratory chain complex I assembly (inferred); ASSOCIATED WITH genetic disease (ortholog); nuclear type mitochondrial complex I deficiency 24 (ortholog); trichorhinophalangeal syndrome type I (ortholog); FOUND IN mitochondrial respiratory chain complex I (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl415,105,305 - 15,113,550 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1415,105,305 - 15,113,281 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2415,761,858 - 15,769,836 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:15679890   PMID:17145712   PMID:30032202  


Genomics

Comparative Map Data
NDUFB9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl415,105,305 - 15,113,550 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1415,105,305 - 15,113,281 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2415,761,858 - 15,769,836 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NDUFB9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388124,539,123 - 124,549,979 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8124,539,101 - 124,580,648 (+)EnsemblGRCh38hg38GRCh38
GRCh378125,551,364 - 125,562,220 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 368125,620,524 - 125,631,408 (+)NCBINCBI36Build 36hg18NCBI36
Build 348125,620,535 - 125,631,399NCBI
Celera8121,739,460 - 121,750,342 (+)NCBICelera
Cytogenetic Map8q24.13NCBI
HuRef8120,876,813 - 120,887,693 (+)NCBIHuRef
CHM1_18125,591,587 - 125,602,470 (+)NCBICHM1_1
T2T-CHM13v2.08125,672,139 - 125,682,993 (+)NCBIT2T-CHM13v2.0
Ndufb9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391558,805,650 - 58,811,365 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1558,805,605 - 58,811,337 (+)EnsemblGRCm39 Ensembl
GRCm381558,933,801 - 58,939,516 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1558,933,756 - 58,939,488 (+)EnsemblGRCm38mm10GRCm38
MGSCv371558,765,365 - 58,771,044 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361558,763,893 - 58,769,572 (+)NCBIMGSCv36mm8
Celera1560,463,602 - 60,469,281 (+)NCBICelera
Cytogenetic Map15D1NCBI
cM Map1525.09NCBI
Ndufb9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8792,370,423 - 92,376,841 (+)NCBIGRCr8
mRatBN7.2790,480,948 - 90,487,367 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl790,436,621 - 90,488,009 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx792,370,572 - 92,376,991 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0794,571,728 - 94,578,147 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0794,398,995 - 94,405,407 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0798,813,062 - 98,819,408 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl798,813,040 - 98,819,452 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0799,411,587 - 99,417,933 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4795,949,322 - 95,955,668 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1795,983,544 - 95,989,916 (-)NCBI
Celera787,246,352 - 87,252,698 (+)NCBICelera
Cytogenetic Map7q33NCBI
Ndufb9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555403,198,145 - 3,203,470 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555403,198,140 - 3,203,470 (+)NCBIChiLan1.0ChiLan1.0
NDUFB9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27141,960,687 - 141,971,615 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18117,471,906 - 117,482,787 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08121,223,857 - 121,234,743 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18123,975,910 - 123,986,781 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8123,975,910 - 123,986,781 (+)Ensemblpanpan1.1panPan2
NDUFB9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11322,624,929 - 22,632,310 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1322,624,945 - 22,632,310 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1322,590,387 - 22,597,760 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01322,966,848 - 22,974,209 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1322,966,746 - 22,979,490 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11322,687,671 - 22,695,059 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01322,797,216 - 22,804,609 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01323,040,099 - 23,047,497 (+)NCBIUU_Cfam_GSD_1.0
Ndufb9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530315,692,060 - 15,697,553 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647023,118,164 - 23,123,749 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647023,118,162 - 23,123,648 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NDUFB9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18119,103,300 - 119,113,440 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8119,102,917 - 119,113,950 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603921,072,813 - 21,082,905 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ndufb9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473530,659,030 - 30,667,372 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473530,660,652 - 30,667,395 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in NDUFB9
521 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 4 3 5 2 23 2 3 3
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000035108   ⟹   ENSSSCP00000030827
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl415,105,305 - 15,113,550 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000079935   ⟹   ENSSSCP00000067692
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl415,108,696 - 15,113,290 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000083219   ⟹   ENSSSCP00000073813
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl415,108,747 - 15,113,290 (-)Ensembl
RefSeq Acc Id: XM_013996497   ⟹   XP_013851951
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1415,105,305 - 15,113,281 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_013851951   ⟸   XM_013996497
- UniProtKB: A0A4X1T0A8 (UniProtKB/TrEMBL),   A0A8D0J914 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000073813   ⟸   ENSSSCT00000083219
RefSeq Acc Id: ENSSSCP00000067692   ⟸   ENSSSCT00000079935
RefSeq Acc Id: ENSSSCP00000030827   ⟸   ENSSSCT00000035108
Protein Domains
Complex 1 LYR protein


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000005976 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005020968 UniProtKB/TrEMBL
  ENSSSCG00025039493 UniProtKB/TrEMBL
  ENSSSCG00035033777 UniProtKB/TrEMBL
  ENSSSCG00055002779 UniProtKB/TrEMBL
  ENSSSCG00065058862 UniProtKB/TrEMBL
  ENSSSCG00070005236 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000035108 ENTREZGENE
  ENSSSCT00000035108.4 UniProtKB/TrEMBL
  ENSSSCT00000079935.2 UniProtKB/TrEMBL
  ENSSSCT00000083219.2 UniProtKB/TrEMBL
  ENSSSCT00005033130.1 UniProtKB/TrEMBL
  ENSSSCT00025053671.1 UniProtKB/TrEMBL
  ENSSSCT00025053714.1 UniProtKB/TrEMBL
  ENSSSCT00025053777.1 UniProtKB/TrEMBL
  ENSSSCT00035044760.1 UniProtKB/TrEMBL
  ENSSSCT00055005324.1 UniProtKB/TrEMBL
  ENSSSCT00055005355.1 UniProtKB/TrEMBL
  ENSSSCT00065080556.1 UniProtKB/TrEMBL
  ENSSSCT00065080561.1 UniProtKB/TrEMBL
  ENSSSCT00070009928.1 UniProtKB/TrEMBL
  ENSSSCT00070009938.1 UniProtKB/TrEMBL
  ENSSSCT00070009946.1 UniProtKB/TrEMBL
InterPro Complex1_LYR UniProtKB/TrEMBL
  Complex1_LYR_NDUFB9_LYRM3 UniProtKB/TrEMBL
  NDUFB9 UniProtKB/TrEMBL
KEGG Report ssc:100154130 UniProtKB/TrEMBL
NCBI Gene NDUFB9 ENTREZGENE
PANTHER NADH DEHYDROGENASE [UBIQUINONE] 1 BETA SUBCOMPLEX SUBUNIT 9 UniProtKB/TrEMBL
  PTHR12868 UniProtKB/TrEMBL
Pfam Complex1_LYR UniProtKB/TrEMBL
UniProt A0A4X1SY51_PIG UniProtKB/TrEMBL
  A0A4X1T0A8 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1T0J7_PIG UniProtKB/TrEMBL
  A0A5G2QSA7_PIG UniProtKB/TrEMBL
  A0A5G2R954_PIG UniProtKB/TrEMBL
  A0A8D0J914 ENTREZGENE, UniProtKB/TrEMBL
  K7GSE5_PIG UniProtKB/TrEMBL
VGNC ID VGNC:90649 ENTREZGENE