TGIF1 (TGFB induced factor homeobox 1)

Gene: TGIF1 (TGFB induced factor homeobox 1) Sus scrofa

Analyze

Symbol:

TGIF1

Name:

TGFB induced factor homeobox 1

RGD ID:

14152961

Description:

ENCODES a protein that exhibits chromatin binding (ortholog); co-SMAD binding (ortholog); INVOLVED IN amacrine cell differentiation (ortholog); cell population proliferation (ortholog); cellular response to growth factor stimulus (ortholog); ASSOCIATED WITH chromosome 18p deletion syndrome (ortholog); Diabetic Nephropathies (ortholog); disorder of sexual development (ortholog); FOUND IN nucleoplasm (inferred); nucleus (inferred); INTERACTS WITH deoxynivalenol

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

homeobox protein TGIF1

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	103,226,402 - 103,234,610 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	103,226,395 - 103,234,591 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	96,252,966 - 96,261,029 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

chromosome 18p deletion syndrome (ISO)

Diabetic Nephropathies (ISO)

disorder of sexual development (ISO)

genetic disease (ISO)

holoprosencephaly (ISO)

holoprosencephaly 4 (ISO)

hypertrophic cardiomyopathy (ISO)

intellectual disability (ISO)

Majeed Syndrome (ISO)

muscular atrophy (ISO)

Neoplasm Invasiveness (ISO)

Neoplasm Metastasis (ISO)

otitis media (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

deoxynivalenol (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

amacrine cell differentiation (ISO)

cell population proliferation (ISO)

cellular response to growth factor stimulus (ISO)

determination of left/right symmetry (ISO)

dorsal/ventral pattern formation (ISO)

fibroblast proliferation (ISO)

negative regulation of cell population proliferation (ISO)

negative regulation of gene expression (ISO)

negative regulation of retinoic acid receptor signaling pathway (ISO)

negative regulation of transcription by RNA polymerase II (IBA,IEA,ISO)

neural tube closure (ISO)

neuron differentiation (ISO)

nodal signaling pathway (ISO)

positive regulation of amacrine cell differentiation (ISO)

positive regulation of fibroblast proliferation (ISO)

regulation of DNA-templated transcription (IEA)

regulation of gastrulation (ISO)

response to xenobiotic stimulus (ISO)

retina development in camera-type eye (ISO)

Cellular Component

nucleoplasm (IEA)

nucleus (IBA,IEA)

Molecular Function

chromatin binding (ISO)

co-SMAD binding (ISO)

DNA binding (IEA)

DNA-binding transcription repressor activity, RNA polymerase II-specific (IBA,IEA)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA,IEA)

sequence-specific double-stranded DNA binding (IEA)

References

Additional References at PubMed

PMID:14681463	PMID:30032202

Genomics

Comparative Map Data

TGIF1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	103,226,402 - 103,234,610 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	103,226,395 - 103,234,591 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	96,252,966 - 96,261,029 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TGIF1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	18	3,412,009 - 3,459,978 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	18	3,411,608 - 3,459,978 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	18	3,412,007 - 3,459,976 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	18	3,402,072 - 3,448,409 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	18	3,402,071 - 3,448,404	NCBI
Celera	18	3,291,675 - 3,337,991 (+)	NCBI		Celera
Cytogenetic Map	18	p11.31	NCBI
HuRef	18	3,376,674 - 3,423,225 (+)	NCBI		HuRef
CHM1_1	18	3,411,321 - 3,457,803 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	18	3,571,386 - 3,619,443 (+)	NCBI		T2T-CHM13v2.0

Tgif1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	71,151,200 - 71,160,527 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	71,151,200 - 71,160,541 (-)	Ensembl		GRCm39 Ensembl
GRCm38	17	70,844,205 - 70,853,532 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	70,844,205 - 70,853,546 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	71,193,545 - 71,202,872 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	70,749,072 - 70,756,055 (-)	NCBI		MGSCv36	mm8
Celera	17	75,106,130 - 75,115,447 (-)	NCBI		Celera
Cytogenetic Map	17	E1.3	NCBI
cM Map	17	41.87	NCBI

Tgif1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	118,194,735 - 118,204,354 (-)	NCBI		GRCr8
mRatBN7.2	9	110,748,094 - 110,757,714 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	110,720,921 - 110,757,802 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	119,134,027 - 119,143,646 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	124,263,610 - 124,273,229 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	122,599,984 - 122,609,603 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	119,181,079 - 119,190,698 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	119,181,083 - 119,190,698 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	118,636,415 - 118,646,034 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	110,043,164 - 110,052,783 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	110,252,647 - 110,262,263 (-)	NCBI
Celera	9	107,878,776 - 107,888,395 (-)	NCBI		Celera
Cytogenetic Map	9	q38	NCBI

Tgif1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955402	7,129,484 - 7,138,340 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955402	7,130,809 - 7,138,945 (-)	NCBI	ChiLan1.0	ChiLan1.0

TGIF1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	17	34,982,388 - 34,993,652 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	18	20,674,979 - 20,686,262 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	18	10,819,015 - 10,830,282 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	18	13,128,354 - 13,139,145 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	18	13,128,359 - 13,139,145 (-)	Ensembl	panpan1.1		panPan2

TGIF1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	70,040,376 - 70,048,346 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	70,040,508 - 70,047,912 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	69,494,904 - 69,503,552 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	70,098,819 - 70,107,547 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	70,099,563 - 70,107,547 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	69,784,127 - 69,792,831 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	69,802,885 - 69,811,583 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	70,108,680 - 70,117,337 (+)	NCBI		UU_Cfam_GSD_1.0

Tgif1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404944	66,405,531 - 66,413,835 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936672	1,128,108 - 1,136,292 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936672	1,128,104 - 1,135,844 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TGIF1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	18	62,691,705 - 62,698,265 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666050	37,556,250 - 37,562,610 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tgif1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624770	13,508,409 - 13,516,457 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624770	13,506,501 - 13,515,388 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in TGIF1
120 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	hemolymphoid system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system
High
Medium	2			3				3	1
Low	8	4	3	2	2	23	2		2
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001244288	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001244289	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001244290	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005665296	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005665298	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000045	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK233501	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK234190	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK238776	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK240577	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK395093	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FP565758	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01016319	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSSCT00000030543 ⟹ ENSSSCP00000024587

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	6	103,226,402 - 103,234,610 (-)	Ensembl

RefSeq Acc Id:

NM_001244288 ⟹ NP_001231217

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	6	103,226,461 - 103,234,157 (-)	NCBI

Sequence:

show sequence

CTCTGACAGCGCTGAGGTGCGCCGAGCAGGAGCGGGGAACAAAGGAGCGGAGTGGGGAGGGGAG
CGAGTTGGGCGAGGGAGAGACCCCGGCCGGCTGCCAGAAGATCCCGGCCGGAGGAAGCCCAAGT
GTCACTTGAATTCCACCCAAGGAGCGGGCGCCTGGGATCGGAGCGCCTTGTTTAGCAATAACGG
CTGGAGCGCGTCCTACAAGTTACGGGAGAGTCGGCCAGGAAGGAGGACAATCGCTTGGCCCCTC
CACCCCCGCTCCTGGCCCCTCGAGACCCCAGCGCTGCCTCGCGCTGGAAGGGGAGCTCCAGAAT
GAAAAGCAAGAAAGGTGTTGTTGCCGTGTCTGGCAGTGAGACAGAGGATGATGACAGCATGGAC
AGCCCCCTGGACCTCTCCTCGTCTGCCGGCAGTTCAGGCAAGAGAAGGCGAAGGGGCAACCTGC
CCAAGGAATCCGTTCAGATCCTCCGCGATTGGCTGTATGAACACCGATACAATGCCTACCCCTC
GGAGCAAGAAAAAGCATTACTGTCCCAGCAGACACACCTCTCTACACTACAGGTCTGTAACTGG
TTCATCAATGCCCGACGCAGGCTCCTCCCGGACATGCTGAGAAAGGATGGCAAAGATCCAAATC
AGTTCACAATTTCCCGACGTGGGGCCAAGATTTCTGAAGCCGGGTCTGTAGAGTCGGCAATGGG
CATCAAAAACTTCATGCCGGCTTTAGAGGAGAGCCCATTTCATTCCTGTACAGCTGGACCCAAC
CCAGCCCTTGGGAGGCCACTGTCTCCTAAGCCATCCTCCCCAGGATCAGTTTTGGCTCGTCCGT
CAGTGATCTGTCATACCACTGTGACTGCATTGAAAGATGTGCCTTTCTCTCTCTGCCAGCCAGT
TGGTGTGGGACAGAACACAGATATACAGCAGATAGCAACCAGCAGCTTTACAGACACCTCCCTC
ATGTACCCAGAGGACACATGTAAATCTGGACCGAGTGCAAATACACAGAGTGGTCTCTTCAACA
CTCCCCCCCCTACTCCACCGGACCTCAACCAAGATTTTAGTGGATTTCAGCTTCTGGTAGATGT
TGCACTCAAACGGGCTGCAGAGATGGAGCTTCAGGCAAAACTGACGGCTTAACCCCTTTTTCAA
GCAAAACCTCAAAAAGGTTATGATTGCCGGGGTGATGGCAAGAGATAGATTGCATTATTTTATA
TTTTTTTATTAATATTTGCACATGGGTTGCTAAAGTGAAGCTTCCTGTTACTGAGATGTCTTCA
ATGGAATCCAGTCATTCCAAGAACTATAAACTCAAAGCTACTGTAGAAACAAAGGGTTTTCTTT
TTTAAAATGTTTCTTGGTAGATTATTCATAATGTGAGATGGTTCCCAAGATCATGTGATTTTTT
TTTTTTTCCCCTTCCCCTCCCCTTTTTTTGTTGGTGTTTTTTCCAGACTGTGCAATAATTAGAG
AACCTATAGCATCTTCTCATTCCCACGTGGAACAGGATGCCCACATACTGTCTAATTAATAAAT
TTCCAATTTTTTTCAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001244289 ⟹ NP_001231218

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	6	103,226,458 - 103,234,456 (-)	NCBI

Sequence:

show sequence

GGCCCACAGGAGAAACTCGCGGCGCTCGGCTGGTGTCGCCGCCGCTGCCGGGGCAGGCGGCGTG
CGCGTAGCAGGGAGACCAGATCACGTTTCTGGGCTCCGCCACCCCCACGAGGGACGAGTGACAG
CGGCCTGGGGGCGCGGAGTGAGGCGGCGCGGCTGCGGCGGCGCTCGGTGCCGTCCTCTCCGGCT
GGAAGGAGCGGGCGCCTGGGATCGGAGCGCCTTGTTTAGCAATAACGGCTGGAGCGCGTCCTAC
AAGTTACGGGAGAGTCGGCCAGGAAGGAGGACAATCGCTTGGCCCCTCCACCCCCGCTCCTGGC
CCCTCGAGACCCCAGCGCTGCCTCGCGCTGGAAGGGGAGCTCCAGAATGAAAAGCAAGAAAGGT
GTTGTTGCCGTGTCTGGCAGTGAGACAGAGGATGATGACAGCATGGACAGCCCCCTGGACCTCT
CCTCGTCTGCCGGCAGTTCAGGCAAGAGAAGGCGAAGGGGCAACCTGCCCAAGGAATCCGTTCA
GATCCTCCGCGATTGGCTGTATGAACACCGATACAATGCCTACCCCTCGGAGCAAGAAAAAGCA
TTACTGTCCCAGCAGACACACCTCTCTACACTACAGGTCTGTAACTGGTTCATCAATGCCCGAC
GCAGGCTCCTCCCGGACATGCTGAGAAAGGATGGCAAAGATCCAAATCAGTTCACAATTTCCCG
ACGTGGGGCCAAGATTTCTGAAGCCGGGTCTGTAGAGTCGGCAATGGGCATCAAAAACTTCATG
CCGGCTTTAGAGGAGAGCCCATTTCATTCCTGTACAGCTGGACCCAACCCAGCCCTTGGGAGGC
CACTGTCTCCTAAGCCATCCTCCCCAGGATCAGTTTTGGCTCGTCCGTCAGTGATCTGTCATAC
CACTGTGACTGCATTGAAAGATGTGCCTTTCTCTCTCTGCCAGCCAGTTGGTGTGGGACAGAAC
ACAGATATACAGCAGATAGCAACCAGCAGCTTTACAGACACCTCCCTCATGTACCCAGAGGACA
CATGTAAATCTGGACCGAGTGCAAATACACAGAGTGGTCTCTTCAACACTCCCCCCCCTACTCC
ACCGGACCTCAACCAAGATTTTAGTGGATTTCAGCTTCTGGTAGATGTTGCACTCAAACGGGCT
GCAGAGATGGAGCTTCAGGCAAAACTGACGGCTTAACCCCTTTTTCAAGCAAAACCTCAAAAAG
GTTATGATTGCCGGGGTGATGGCAAGAGATAGATTGCATTATTTTATATTTTTTTATTAATATT
TGCACATGGGTTGCTAAAGTGAAGCTTCCTGTTACTGAGATGTCTTCAATGGAATCCAGTCATT
CCAAGAACTATAAACTCAAAGCTACTGTAGAAACAAAGGGTTTTCTTTTTTAAAATGTTTCTTG
GTAGATTATTCATAATGTGAGATGGTTCCCAAGATCATGTGATTTTTTTTTTTTCCCCTTCCCC
TCCCCTTTTTTTGTTGGTGTTTTTTCCAGACTGTGCAATAATTAGAGAACCTATAGCATCTTCT
CATTCCCACGTGGAACAGGATGCCCACATACTGTCTAATTAATAAATTTCCAATTTTTTTCAAA
CAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001244290 ⟹ NP_001231219

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	6	103,226,395 - 103,232,779 (-)	NCBI

Sequence:

show sequence

CAGACTCGTCCTGCAAATACAATTGAAACACTCATGTTAGTGGGGCAGCGTCGAACCCTAGAGG
GTTCCTACGGCCACGCTTTCACCTTGAATTTCTGTTAATTTGATTCTGGGCTAGTGACTTTGTA
ACGCGCCCAACTCCCCACCTCCTGCTTCCCGGGAGAGAGTGGAACGAAAGGTCCACCCCGGGGC
ATTGGGGAGTTGTAGTGGGACTAACTCCTTCCGTTCCCTCCCTGGGGACCGTGAGAGCGAGCGC
GGGTTTGGACGTTTAACTGAGCTCGGTGTTGTTGCCGTGTCTGGCAGTGAGACAGAGGATGATG
ACAGCATGGACAGCCCCCTGGACCTCTCCTCGTCTGCCGGCAGTTCAGGCAAGAGAAGGCGAAG
GGGCAACCTGCCCAAGGAATCCGTTCAGATCCTCCGCGATTGGCTGTATGAACACCGATACAAT
GCCTACCCCTCGGAGCAAGAAAAAGCATTACTGTCCCAGCAGACACACCTCTCTACACTACAGG
TCTGTAACTGGTTCATCAATGCCCGACGCAGGCTCCTCCCGGACATGCTGAGAAAGGATGGCAA
AGATCCAAATCAGTTCACAATTTCCCGACGTGGGGCCAAGATTTCTGAAGCCGGGTCTGTAGAG
TCGGCAATGGGCATCAAAAACTTCATGCCGGCTTTAGAGGAGAGCCCATTTCATTCCTGTACAG
CTGGACCCAACCCAGCCCTTGGGAGGCCACTGTCTCCTAAGCCATCCTCCCCAGGATCAGTTTT
GGCTCGTCCGTCAGTGATCTGTCATACCACTGTGACTGCATTGAAAGATGTGCCTTTCTCTCTC
TGCCAGCCAGTTGGTGTGGGACAGAACACAGATATACAGCAGATAGCAACCAGCAGCTTTACAG
ACACCTCCCTCATGTACCCAGAGGACACATGTAAATCTGGACCGAGTGCAAATACACAGAGTGG
TCTCTTCAACACTCCCCCCCCTACTCCACCGGACCTCAACCAAGATTTTAGTGGATTTCAGCTT
CTGGTAGATGTTGCACTCAAACGGGCTGCAGAGATGGAGCTTCAGGCAAAACTGACGGCTTAAC
CCCTTTTTCAAGCAAAACCTCAAAAAGGTTATGATTGCCGGGGTGATGGCAAGAGATAGATTGC
ATTATTTTATATTTTTTTATTAATATTTGCACATGGGTTGCTAAAGTGAAGCTTCCTGTTACTG
AGATGTCTTCAATAGAATCCAGTCATTCCAAGAACTATAAACTCAAAGCTACTGTAGAAACAAA
GGGTTTTCTTTTTTAAAATGTTTCTTGGTAGATTATTCATAATGTGAGATGGTTCCCAAGATCA
TGTGATTTTTTTTTTTTTTCCCCTTCCCCTCCCCTTTTTTTGTTGGTGTTTTTTCCAGACTGTG
CAATAATTAGAGAACCTATAGCATCTTCTCATTCCCACGTGGAACAGGATGCCCACATACTGTC
TAATTAATAAATTTCCAATTTTTTTCAAACAAGTATGAATCTAGTTGATTGATGCATTTTTTTT
TCATGACATAATAAAGTATTTCTTTAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_005665296 ⟹ XP_005665353

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	6	103,226,395 - 103,232,480 (-)	NCBI

Sequence:

show sequence

GGAGCGCCCCGGTGGCCTCGGGAGGCCCTGGCAACTCGTGGAGGACTGACAGGTCCAGATCGTC
ACTGGAAGGCATTCCCTCCCTCGTGGCGGAACTGACGGGATAAGTTGAGGGCTTGTTTATGACG
AGCGCCTCCTGTGATCCGAGGCCAGAGCTGGGCTTGCGCCGGGGCGGGCTCCCTCATTGTTTGG
GCTCCGGCGGGGGAGGCAATAGTTATCCCCCCCGACCACCCCCAAGGCTCTCGGGTACCCTCCC
CGTGGCCCCTTGCCCTCCACCCGCCCCCCGTGCCTCCTCTGGCGCTCTCCCCCCAGCAGAGGGA
TGTGGCGGGAACCCGGGGCCCCTGGGGAATGTTCAGGGCGCGCTGCCCCGGGGCGCGAGGTCCT
GCTACTGCGCGCGGACTCATGGAAACAATGAAAGGTGTTGTTGCCGTGTCTGGCAGTGAGACAG
AGGATGATGACAGCATGGACAGCCCCCTGGACCTCTCCTCGTCTGCCGGCAGTTCAGGCAAGAG
AAGGCGAAGGGGCAACCTGCCCAAGGAATCCGTTCAGATCCTCCGCGATTGGCTGTATGAACAC
CGATACAATGCCTACCCCTCGGAGCAAGAAAAAGCATTACTGTCCCAGCAGACACACCTCTCTA
CACTACAGGTCTGTAACTGGTTCATCAATGCCCGACGCAGGCTCCTCCCGGACATGCTGAGAAA
GGATGGCAAAGATCCAAATCAGTTCACAATTTCCCGACGTGGGGCCAAGATTTCTGAAGCCGGG
TCTGTAGAGTCGGCAATGGGCATCAAAAACTTCATGCCGGCTTTAGAGGAGAGCCCATTTCATT
CCTGTACAGCTGGACCCAACCCAGCCCTTGGGAGGCCACTGTCTCCTAAGCCATCCTCCCCAGG
ATCAGTTTTGGCTCGTCCGTCAGTGATCTGTCATACCACTGTGACTGCATTGAAAGATGTGCCT
TTCTCTCTCTGCCAGCCAGTTGGTGTGGGACAGAACACAGATATACAGCAGATAGCAACCAGCA
GCTTTACAGACACCTCCCTCATGTACCCAGAGGACACATGTAAATCTGGACCGAGTGCAAATAC
ACAGAGTGGTCTCTTCAACACTCCCCCCCCTACTCCACCGGACCTCAACCAAGATTTTAGTGGA
TTTCAGCTTCTGGTAGATGTTGCACTCAAACGGGCTGCAGAGATGGAGCTTCAGGCAAAACTGA
CGGCTTAACCCCTTTTTCAAGCAAAACCTCAAAAAGGTTATGATTGCCGGGGTGATGGCAAGAG
ATAGATTGCATTATTTTATATTTTTTTATTAATATTTGCACATGGGTTGCTAAAGTGAAGCTTC
CTGTTACTGAGATGTCTTCAATGGAATCCAGTCATTCCAAGAACTATAAACTCAAAGCTACTGT
AGAAACAAAGGGTTTTCTTTTTTAAAATGTTTCTTGGTAGATTATTCATAATGTGAGATGGTTC
CCAAGATCATGTGATTTTTTTTTTTTTCCCCTTCCCCTCCCCTTTTTTTGTTGGTGTTTTTTCC
AGACTGTGCAATAATTAGAGAACCTATAGCATCTTCTCATTCCCACGTGGAACAGGATGCCCAC
ATACTGTCTAATTAATAAATTTCCAATTTTTTTCAAACAAGTATGAATCTAGTTGATTGATGCA
TTTTTTTTTCATGACATAATAAAGTATTTTCTTTAAAAA

hide sequence

RefSeq Acc Id:

XM_005665298 ⟹ XP_005665355

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	6	103,226,395 - 103,234,591 (-)	NCBI

Sequence:

show sequence

TGAGGCAGCTGTCAAAAACGAAAGGAGCCTTTTCTTCCCCGGGGTGGAGGAGGGGACGGCCTTT
TTCCCATCTGTTGCAATTTCGTAACCAAACCAAACCAAACCAAACGCACCCTCCCCAGCCCCGG
GAAGAAAGGCCCACAGGAGAAACTCGCGGCGCTCGGCTGGTGTCGCCGCCGCTGCCGGGGCAGG
CGGCGTGCGCGCAGCAGGGAGACCAGATCACGTTTCTGGGCTCCGCCACCCCCACGAGGGACGA
GTGACAGCGGCCTGGGGGCGCGGAGTGAGGCGGCGCGGCTGCGGCGGCGCTCGGTGCCGTCCTC
TCCGGCTGGAAGGTGTTGTTGCCGTGTCTGGCAGTGAGACAGAGGATGATGACAGCATGGACAG
CCCCCTGGACCTCTCCTCGTCTGCCGGCAGTTCAGGCAAGAGAAGGCGAAGGGGCAACCTGCCC
AAGGAATCCGTTCAGATCCTCCGCGATTGGCTGTATGAACACCGATACAATGCCTACCCCTCGG
AGCAAGAAAAAGCATTACTGTCCCAGCAGACACACCTCTCTACACTACAGGTCTGTAACTGGTT
CATCAATGCCCGACGCAGGCTCCTCCCGGACATGCTGAGAAAGGATGGCAAAGATCCAAATCAG
TTCACAATTTCCCGACGTGGGGCCAAGATTTCTGAAGCCGGGTCTGTAGAGTCGGCAATGGGCA
TCAAAAACTTCATGCCGGCTTTAGAGGAGAGCCCATTTCATTCCTGTACAGCTGGACCCAACCC
AGCCCTTGGGAGGCCACTGTCTCCTAAGCCATCCTCCCCAGGATCAGTTTTGGCTCGTCCGTCA
GTGATCTGTCATACCACTGTGACTGCATTGAAAGATGTGCCTTTCTCTCTCTGCCAGCCAGTTG
GTGTGGGACAGAACACAGATATACAGCAGATAGCAACCAGCAGCTTTACAGACACCTCCCTCAT
GTACCCAGAGGACACATGTAAATCTGGACCGAGTGCAAATACACAGAGTGGTCTCTTCAACACT
CCCCCCCCTACTCCACCGGACCTCAACCAAGATTTTAGTGGATTTCAGCTTCTGGTAGATGTTG
CACTCAAACGGGCTGCAGAGATGGAGCTTCAGGCAAAACTGACGGCTTAACCCCTTTTTCAAGC
AAAACCTCAAAAAGGTTATGATTGCCGGGGTGATGGCAAGAGATAGATTGCATTATTTTATATT
TTTTTATTAATATTTGCACATGGGTTGCTAAAGTGAAGCTTCCTGTTACTGAGATGTCTTCAAT
GGAATCCAGTCATTCCAAGAACTATAAACTCAAAGCTACTGTAGAAACAAAGGGTTTTCTTTTT
TAAAATGTTTCTTGGTAGATTATTCATAATGTGAGATGGTTCCCAAGATCATGTGATTTTTTTT
TTTTTCCCCTTCCCCTCCCCTTTTTTTGTTGGTGTTTTTTCCAGACTGTGCAATAATTAGAGAA
CCTATAGCATCTTCTCATTCCCACGTGGAACAGGATGCCCACATACTGTCTAATTAATAAATTT
CCAATTTTTTTCAAACAAGTATGAATCTAGTTGATTGATGCATTTTTTTTTCATGACATAATAA
AGTATTTTCTTTAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001231217	(Get FASTA)	NCBI Sequence Viewer
	NP_001231218	(Get FASTA)	NCBI Sequence Viewer
	NP_001231219	(Get FASTA)	NCBI Sequence Viewer
	XP_005665353	(Get FASTA)	NCBI Sequence Viewer
	XP_005665355	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000024587
	ENSSSCP00000024587.1
	ENSSSCP00005002189.1
	ENSSSCP00015001866.1
	ENSSSCP00025015571.1
	ENSSSCP00030033419.1
	ENSSSCP00035008947.1
	ENSSSCP00040009097.1
	ENSSSCP00045009168.1
	ENSSSCP00050026841.1
	ENSSSCP00055020729.1
	ENSSSCP00060005279.1
	ENSSSCP00065017521.1
	ENSSSCP00070044269.1
	ENSSSCP00070044270.1
	ENSSSCP00070044273.1
	ENSSSCP00070044275.1

RefSeq Acc Id:	XP_005665355 ⟸ XM_005665298
- Peptide Label:	isoform X2
- UniProtKB:	A0A4X1VSY9 (UniProtKB/TrEMBL), A0A8D0HQR4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDSPLDLSSSAGSSGKRRRRGNLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVC NWFINARRRLLPDMLRKDGKDPNQFTISRRGAKISEAGSVESAMGIKNFMPALEESPFHSCTAG PNPALGRPLSPKPSSPGSVLARPSVICHTTVTALKDVPFSLCQPVGVGQNTDIQQIATSSFTDT SLMYPEDTCKSGPSANTQSGLFNTPPPTPPDLNQDFSGFQLLVDVALKRAAEMELQAKLTA hide sequence

RefSeq Acc Id:	NP_001231219 ⟸ NM_001244290
- Peptide Label:	isoform d
- UniProtKB:	A0A4X1VSY9 (UniProtKB/TrEMBL), A0A8D0HQR4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDSPLDLSSSAGSSGKRRRRGNLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVC NWFINARRRLLPDMLRKDGKDPNQFTISRRGAKISEAGSVESAMGIKNFMPALEESPFHSCTAG PNPALGRPLSPKPSSPGSVLARPSVICHTTVTALKDVPFSLCQPVGVGQNTDIQQIATSSFTDT SLMYPEDTCKSGPSANTQSGLFNTPPPTPPDLNQDFSGFQLLVDVALKRAAEMELQAKLTA hide sequence

RefSeq Acc Id:

XP_005665353 ⟸ XM_005665296

- Peptide Label:

isoform X1

- Sequence:

show sequence

MFRARCPGARGPATARGLMETMKGVVAVSGSETEDDDSMDSPLDLSSSAGSSGKRRRRGNLPKE
SVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKDGKDPNQFT
ISRRGAKISEAGSVESAMGIKNFMPALEESPFHSCTAGPNPALGRPLSPKPSSPGSVLARPSVI
CHTTVTALKDVPFSLCQPVGVGQNTDIQQIATSSFTDTSLMYPEDTCKSGPSANTQSGLFNTPP
PTPPDLNQDFSGFQLLVDVALKRAAEMELQAKLTA

hide sequence

RefSeq Acc Id:	NP_001231218 ⟸ NM_001244289
- Peptide Label:	isoform c
- UniProtKB:	I3LKH3 (UniProtKB/TrEMBL), A0A4X1VR34 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKSKKGVVAVSGSETEDDDSMDSPLDLSSSAGSSGKRRRRGNLPKESVQILRDWLYEHRYNAYP SEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKDGKDPNQFTISRRGAKISEAGSVESAM GIKNFMPALEESPFHSCTAGPNPALGRPLSPKPSSPGSVLARPSVICHTTVTALKDVPFSLCQP VGVGQNTDIQQIATSSFTDTSLMYPEDTCKSGPSANTQSGLFNTPPPTPPDLNQDFSGFQLLVD VALKRAAEMELQAKLTA hide sequence

RefSeq Acc Id:	NP_001231217 ⟸ NM_001244288
- Peptide Label:	isoform c
- UniProtKB:	I3LKH3 (UniProtKB/TrEMBL), A0A4X1VR34 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKSKKGVVAVSGSETEDDDSMDSPLDLSSSAGSSGKRRRRGNLPKESVQILRDWLYEHRYNAYP SEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKDGKDPNQFTISRRGAKISEAGSVESAM GIKNFMPALEESPFHSCTAGPNPALGRPLSPKPSSPGSVLARPSVICHTTVTALKDVPFSLCQP VGVGQNTDIQQIATSSFTDTSLMYPEDTCKSGPSANTQSGLFNTPPPTPPDLNQDFSGFQLLVD VALKRAAEMELQAKLTA hide sequence

RefSeq Acc Id:

ENSSSCP00000024587 ⟸ ENSSSCT00000030543

Protein Domains

Homeobox

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000024174	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00005002465	UniProtKB/TrEMBL
	ENSSSCG00015003726	UniProtKB/TrEMBL
	ENSSSCG00025027391	UniProtKB/TrEMBL
	ENSSSCG00030052475	UniProtKB/TrEMBL
	ENSSSCG00035018531	UniProtKB/TrEMBL
	ENSSSCG00040016170	UniProtKB/TrEMBL
	ENSSSCG00045007916	UniProtKB/TrEMBL
	ENSSSCG00050045955	UniProtKB/TrEMBL
	ENSSSCG00055013234	UniProtKB/TrEMBL
	ENSSSCG00060010596	UniProtKB/TrEMBL
	ENSSSCG00065030554	UniProtKB/TrEMBL
	ENSSSCG00070026131	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000030543	ENTREZGENE
	ENSSSCT00000030543.4	UniProtKB/TrEMBL
	ENSSSCT00005003742.1	UniProtKB/TrEMBL
	ENSSSCT00015004904.1	UniProtKB/TrEMBL
	ENSSSCT00025037176.1	UniProtKB/TrEMBL
	ENSSSCT00030073169.1	UniProtKB/TrEMBL
	ENSSSCT00035023932.1	UniProtKB/TrEMBL
	ENSSSCT00040021789.1	UniProtKB/TrEMBL
	ENSSSCT00045013294.1	UniProtKB/TrEMBL
	ENSSSCT00050062529.1	UniProtKB/TrEMBL
	ENSSSCT00055026089.1	UniProtKB/TrEMBL
	ENSSSCT00060013788.1	UniProtKB/TrEMBL
	ENSSSCT00065041310.1	UniProtKB/TrEMBL
	ENSSSCT00070052306.1	UniProtKB/TrEMBL
	ENSSSCT00070052307.1	UniProtKB/TrEMBL
	ENSSSCT00070052310.1	UniProtKB/TrEMBL
	ENSSSCT00070052312.1	UniProtKB/TrEMBL
Gene3D-CATH	Homeodomain-like	UniProtKB/TrEMBL
InterPro	Homeobox-like_sf	UniProtKB/TrEMBL
	Homeobox_dom	UniProtKB/TrEMBL
	Homeobox_KN_domain	UniProtKB/TrEMBL
KEGG Report	ssc:100625732	UniProtKB/TrEMBL
NCBI Gene	TGIF1	ENTREZGENE
PANTHER	HOMEOBOX PROTEIN TGIF1	UniProtKB/TrEMBL
	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	UniProtKB/TrEMBL
Pfam	Homeobox_KN	UniProtKB/TrEMBL
PROSITE	HOMEOBOX_2	UniProtKB/TrEMBL
SMART	HOX	UniProtKB/TrEMBL
Superfamily-SCOP	SSF46689	UniProtKB/TrEMBL
UniProt	A0A4X1VR34	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1VSY9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0HQR4	ENTREZGENE, UniProtKB/TrEMBL
	I3LKH3	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:93935	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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