LOC110261636 (serpin B3-like) - Rat Genome Database

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Gene: LOC110261636 (serpin B3-like) Sus scrofa
Analyze
Symbol: LOC110261636
Name: serpin B3-like
RGD ID: 14152449
Description: ENCODES a protein that exhibits enzyme binding (ortholog); protease binding (ortholog); INVOLVED IN protection from natural killer cell mediated cytotoxicity (ortholog); ASSOCIATED WITH chromosome 18q deletion syndrome (ortholog); contact dermatitis (ortholog); genetic disease (ortholog); FOUND IN cytosol (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11158,073,431 - 158,079,267 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
LOC110261636
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11158,073,431 - 158,079,267 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SERPINB4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381863,637,259 - 63,644,256 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1863,637,259 - 63,644,256 (-)EnsemblGRCh38hg38GRCh38
GRCh371861,304,493 - 61,311,490 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361859,455,473 - 59,462,482 (-)NCBINCBI36Build 36hg18NCBI36
Build 341859,455,481 - 59,462,470NCBI
Celera1858,024,988 - 58,031,997 (-)NCBICelera
Cytogenetic Map18q21.33NCBI
HuRef1858,004,325 - 58,011,334 (-)NCBIHuRef
CHM1_11861,300,680 - 61,307,689 (-)NCBICHM1_1
T2T-CHM13v2.01863,842,341 - 63,849,338 (-)NCBIT2T-CHM13v2.0

Variants

.
Variants in LOC110261636
28 total Variants

Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021099545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_021099545   ⟹   XP_020955204
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11158,073,431 - 158,079,267 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020955204   ⟸   XM_021099545
- UniProtKB: A0A287B1X2 (UniProtKB/TrEMBL),   A0A8D0QHG7 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
SERPIN


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000054030 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025003324 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000043367.3 UniProtKB/TrEMBL
  ENSSSCT00000082772 ENTREZGENE
  ENSSSCT00000082772.2 UniProtKB/TrEMBL
  ENSSSCT00000095770.1 UniProtKB/TrEMBL
  ENSSSCT00000096990.1 UniProtKB/TrEMBL
  ENSSSCT00000097082.1 UniProtKB/TrEMBL
  ENSSSCT00000099129.1 UniProtKB/TrEMBL
  ENSSSCT00000102656.1 UniProtKB/TrEMBL
  ENSSSCT00000106309.1 UniProtKB/TrEMBL
  ENSSSCT00000106725.1 UniProtKB/TrEMBL
  ENSSSCT00025004492.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.39.10 UniProtKB/TrEMBL
  3.30.497.10 UniProtKB/TrEMBL
  6.20.40.10 UniProtKB/TrEMBL
InterPro Serpin_CS UniProtKB/TrEMBL
  Serpin_dom UniProtKB/TrEMBL
  Serpin_fam UniProtKB/TrEMBL
  Serpin_sf UniProtKB/TrEMBL
  Serpin_sf_1 UniProtKB/TrEMBL
  Serpin_sf_2 UniProtKB/TrEMBL
NCBI Gene LOC110261636 ENTREZGENE
PANTHER PTHR11461 UniProtKB/TrEMBL
  SERPIN B4 UniProtKB/TrEMBL
Pfam Serpin UniProtKB/TrEMBL
PROSITE SERPIN UniProtKB/TrEMBL
SMART SERPIN UniProtKB/TrEMBL
Superfamily-SCOP SSF56574 UniProtKB/TrEMBL
UniProt A0A287AAT5_PIG UniProtKB/TrEMBL
  A0A287B1X2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0QHG7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FAJ7_PIG UniProtKB/TrEMBL
  A0A8W4FBV0_PIG UniProtKB/TrEMBL
  A0A8W4FDR4_PIG UniProtKB/TrEMBL
  A0A8W4FIC1_PIG UniProtKB/TrEMBL
  A0A8W4FIM0_PIG UniProtKB/TrEMBL
  A0A8W4FK30_PIG UniProtKB/TrEMBL
  A0A8W4FQB4_PIG UniProtKB/TrEMBL