GABRB3 (gamma-aminobutyric acid type A receptor subunit beta3) - Rat Genome Database

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Gene: GABRB3 (gamma-aminobutyric acid type A receptor subunit beta3) Sus scrofa
Analyze
Symbol: GABRB3
Name: gamma-aminobutyric acid type A receptor subunit beta3
RGD ID: 14152412
Description: ENCODES a protein that exhibits AP-2 adaptor complex binding (ortholog); chloride channel activity (ortholog); GABA-A receptor activity (ortholog); INVOLVED IN brain development (ortholog); cellular response to zinc ion (ortholog); cerebellum development (ortholog); ASSOCIATED WITH Angelman syndrome (ortholog); autism spectrum disorder (ortholog); autistic disorder (ortholog); FOUND IN cell surface (ortholog); GABA-A receptor complex (ortholog); GABA-ergic synapse (ortholog); INTERACTS WITH ethanol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: gamma-aminobutyric acid (GABA) A receptor, beta 3; gamma-aminobutyric acid receptor subunit beta-3; gamma-aminobutyric acid type A receptor beta3 subunit
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1140,566,540 - 140,905,623 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11140,566,443 - 140,906,516 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
ethanol  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
GABRB3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1140,566,540 - 140,905,623 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11140,566,443 - 140,906,516 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
GABRB3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381526,543,552 - 26,773,763 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1526,543,552 - 26,939,539 (-)EnsemblGRCh38hg38GRCh38
GRCh371526,788,699 - 27,018,910 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361524,339,786 - 24,570,020 (-)NCBINCBI36Build 36hg18NCBI36
Build 341524,342,555 - 24,570,020NCBI
Celera154,950,603 - 5,179,865 (-)NCBICelera
Cytogenetic Map15q12NCBI
HuRef154,917,779 - 5,148,361 (-)NCBIHuRef
CHM1_11526,738,348 - 26,968,576 (-)NCBICHM1_1
T2T-CHM13v2.01524,283,987 - 24,515,087 (-)NCBIT2T-CHM13v2.0
Gabrb3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39757,240,266 - 57,478,550 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl757,069,440 - 57,478,550 (+)EnsemblGRCm39 Ensembl
GRCm38757,590,518 - 57,828,802 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl757,419,692 - 57,828,802 (+)EnsemblGRCm38mm10GRCm38
MGSCv37764,845,904 - 65,084,172 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36757,458,398 - 57,696,666 (+)NCBIMGSCv36mm8
Celera754,911,328 - 55,150,383 (+)NCBICelera
Cytogenetic Map7B5NCBI
cM Map733.53NCBI
Gabrb3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81117,602,772 - 117,838,230 (+)NCBIGRCr8
mRatBN7.21108,467,047 - 108,702,522 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1108,296,124 - 108,698,961 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1113,838,572 - 114,068,957 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01122,311,079 - 122,541,470 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01115,559,397 - 115,789,792 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01113,034,251 - 113,265,364 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1112,976,770 - 113,265,364 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01114,042,551 - 114,275,043 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41109,047,399 - 109,277,756 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11109,125,741 - 109,356,099 (+)NCBI
Celera1102,635,270 - 102,866,355 (+)NCBICelera
Cytogenetic Map1q22NCBI
Gabrb3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555332,573,599 - 2,938,952 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555332,879,437 - 2,938,952 (+)NCBIChiLan1.0ChiLan1.0
GABRB3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2168,504,014 - 8,732,012 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11512,144,864 - 12,373,305 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0153,129,481 - 3,357,495 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11523,981,359 - 24,201,975 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1523,981,359 - 24,058,357 (-)Ensemblpanpan1.1panPan2
GABRB3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1333,878,948 - 34,101,987 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl333,878,904 - 34,097,764 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha336,567,998 - 36,799,821 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0334,213,315 - 34,437,878 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl334,213,156 - 34,436,244 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1333,753,749 - 33,985,358 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0334,016,414 - 34,241,830 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0334,163,761 - 34,395,684 (+)NCBIUU_Cfam_GSD_1.0
Gabrb3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640122,077,313 - 122,344,190 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647139,791,613 - 40,187,923 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647139,791,633 - 40,193,049 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GABRB3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12655,319,667 - 55,543,116 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2655,471,907 - 55,538,855 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605438,152,669 - 38,377,691 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gabrb3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624896966,487 - 1,173,625 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624896962,253 - 1,173,842 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in GABRB3
8775 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system endocrine system nervous system
High
Medium 3 22
Low 1
Below cutoff 4

Sequence


RefSeq Acc Id: ENSSSCT00000018541   ⟹   ENSSSCP00000018041
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1140,566,540 - 140,905,620 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000048656   ⟹   ENSSSCP00000056806
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1140,675,569 - 140,905,623 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000063711   ⟹   ENSSSCP00000055559
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1140,676,349 - 140,905,620 (+)Ensembl
RefSeq Acc Id: XM_021098607   ⟹   XP_020954266
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11140,675,618 - 140,906,516 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021098613   ⟹   XP_020954272
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11140,566,443 - 140,905,662 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021098621   ⟹   XP_020954280
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11140,676,314 - 140,905,662 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021098629   ⟹   XP_020954288
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11140,675,652 - 140,905,662 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021098630   ⟹   XP_020954289
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11140,844,959 - 140,905,662 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020954272   ⟸   XM_021098613
- Peptide Label: isoform X2
- UniProtKB: A0A4X1UF50 (UniProtKB/TrEMBL),   F1RR58 (UniProtKB/TrEMBL),   A0A8D0JJR4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020954266   ⟸   XM_021098607
- Peptide Label: isoform X1
- UniProtKB: A0A287BK82 (UniProtKB/TrEMBL),   A0A8D0ZUD7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020954288   ⟸   XM_021098629
- Peptide Label: isoform X4
- UniProtKB: A0A4X1UFZ2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020954280   ⟸   XM_021098621
- Peptide Label: isoform X3
- UniProtKB: A0A4X1UB00 (UniProtKB/TrEMBL),   A0A4X1UFZ2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020954289   ⟸   XM_021098630
- Peptide Label: isoform X5
- UniProtKB: A0A4X1UG02 (UniProtKB/TrEMBL),   A0A4X1UF20 (UniProtKB/TrEMBL),   A0A8D0JK35 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000056806   ⟸   ENSSSCT00000048656
RefSeq Acc Id: ENSSSCP00000055559   ⟸   ENSSSCT00000063711
RefSeq Acc Id: ENSSSCP00000018041   ⟸   ENSSSCT00000018541

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000038547 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005030314 UniProtKB/TrEMBL
  ENSSSCG00025035904 UniProtKB/TrEMBL
  ENSSSCG00030037026 UniProtKB/TrEMBL
  ENSSSCG00035044409 UniProtKB/TrEMBL
  ENSSSCG00040061072 UniProtKB/TrEMBL
  ENSSSCG00045014854 UniProtKB/TrEMBL
  ENSSSCG00050001160 UniProtKB/TrEMBL
  ENSSSCG00055015122 UniProtKB/TrEMBL
  ENSSSCG00060003630 UniProtKB/TrEMBL
  ENSSSCG00065050660 UniProtKB/TrEMBL
  ENSSSCG00070016374 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000018541 ENTREZGENE
  ENSSSCT00000018541.5 UniProtKB/TrEMBL
  ENSSSCT00000048656 ENTREZGENE
  ENSSSCT00000048656.3 UniProtKB/TrEMBL
  ENSSSCT00000063711 ENTREZGENE
  ENSSSCT00000063711.3 UniProtKB/TrEMBL
  ENSSSCT00005048413.1 UniProtKB/TrEMBL
  ENSSSCT00005048443.1 UniProtKB/TrEMBL
  ENSSSCT00005048488.1 UniProtKB/TrEMBL
  ENSSSCT00005048569.1 UniProtKB/TrEMBL
  ENSSSCT00005048601.1 UniProtKB/TrEMBL
  ENSSSCT00005048714.1 UniProtKB/TrEMBL
  ENSSSCT00025049026.1 UniProtKB/TrEMBL
  ENSSSCT00025049080.1 UniProtKB/TrEMBL
  ENSSSCT00025049189.1 UniProtKB/TrEMBL
  ENSSSCT00030051508.1 UniProtKB/TrEMBL
  ENSSSCT00030051579.1 UniProtKB/TrEMBL
  ENSSSCT00030051651.1 UniProtKB/TrEMBL
  ENSSSCT00035059013.1 UniProtKB/TrEMBL
  ENSSSCT00035059024.1 UniProtKB/TrEMBL
  ENSSSCT00035059039.1 UniProtKB/TrEMBL
  ENSSSCT00040083641.1 UniProtKB/TrEMBL
  ENSSSCT00040083831.1 UniProtKB/TrEMBL
  ENSSSCT00040084005.1 UniProtKB/TrEMBL
  ENSSSCT00045025306.1 UniProtKB/TrEMBL
  ENSSSCT00045025397.1 UniProtKB/TrEMBL
  ENSSSCT00045025494.1 UniProtKB/TrEMBL
  ENSSSCT00050001551.1 UniProtKB/TrEMBL
  ENSSSCT00055029851.1 UniProtKB/TrEMBL
  ENSSSCT00055030049.1 UniProtKB/TrEMBL
  ENSSSCT00055030166.1 UniProtKB/TrEMBL
  ENSSSCT00060004499.1 UniProtKB/TrEMBL
  ENSSSCT00060004504.1 UniProtKB/TrEMBL
  ENSSSCT00060004511.1 UniProtKB/TrEMBL
  ENSSSCT00065069403.1 UniProtKB/TrEMBL
  ENSSSCT00065069410.1 UniProtKB/TrEMBL
  ENSSSCT00065069428.1 UniProtKB/TrEMBL
  ENSSSCT00070032353.1 UniProtKB/TrEMBL
  ENSSSCT00070032397.1 UniProtKB/TrEMBL
  ENSSSCT00070032404.1 UniProtKB/TrEMBL
  ENSSSCT00070032414.1 UniProtKB/TrEMBL
  ENSSSCT00070032443.1 UniProtKB/TrEMBL
  ENSSSCT00070032453.1 UniProtKB/TrEMBL
  ENSSSCT00070032456.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.58.390 UniProtKB/TrEMBL
  2.70.170.10 UniProtKB/TrEMBL
InterPro GABAA/Glycine_rcpt UniProtKB/TrEMBL
  GABAAb_rcpt UniProtKB/TrEMBL
  Neur_chan_lig-bd UniProtKB/TrEMBL
  Neur_chan_lig-bd_sf UniProtKB/TrEMBL
  Neur_channel UniProtKB/TrEMBL
  Neuro-gated_channel_TM_sf UniProtKB/TrEMBL
  Neuro_actylchol_rec UniProtKB/TrEMBL
  Neurotrans-gated_channel_TM UniProtKB/TrEMBL
  Neurotransmitter_ion_chnl_CS UniProtKB/TrEMBL
NCBI Gene GABRB3 ENTREZGENE
PANTHER GAMMA-AMINOBUTYRIC ACID RECEPTOR SUBUNIT BETA-3 UniProtKB/TrEMBL
  PTHR18945 UniProtKB/TrEMBL
Pfam Neur_chan_LBD UniProtKB/TrEMBL
  Neur_chan_memb UniProtKB/TrEMBL
PRINTS GABAARBETA UniProtKB/TrEMBL
  GABAARECEPTR UniProtKB/TrEMBL
  NRIONCHANNEL UniProtKB/TrEMBL
PROSITE NEUROTR_ION_CHANNEL UniProtKB/TrEMBL
Superfamily-SCOP SSF63712 UniProtKB/TrEMBL
  SSF90112 UniProtKB/TrEMBL
UniProt A0A287BHF4_PIG UniProtKB/TrEMBL
  A0A287BK82 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1UAY7_PIG UniProtKB/TrEMBL
  A0A4X1UB00 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1UDG9_PIG UniProtKB/TrEMBL
  A0A4X1UF20 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1UF50 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1UFZ2 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1UG02 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0JJR4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0JK35 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0JTX6_PIG UniProtKB/TrEMBL
  A0A8D0JVC1_PIG UniProtKB/TrEMBL
  A0A8D0JX94_PIG UniProtKB/TrEMBL
  A0A8D0LSG0_PIG UniProtKB/TrEMBL
  A0A8D0ZUD7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1FGZ5_PIG UniProtKB/TrEMBL
  F1RR58 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:88308 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-02-25 GABRB3  gamma-aminobutyric acid type A receptor subunit beta3  GABRB3  gamma-aminobutyric acid type A receptor beta3 subunit  Symbol and/or name change 5135510 APPROVED