CGRRF1 (cell growth regulator with ring finger domain 1) - Rat Genome Database

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Gene: CGRRF1 (cell growth regulator with ring finger domain 1) Sus scrofa
Analyze
Symbol: CGRRF1
Name: cell growth regulator with ring finger domain 1
RGD ID: 14150809
Description: INVOLVED IN negative regulation of cell growth (ortholog); ASSOCIATED WITH dystonia 5 (ortholog); genetic disease (ortholog); syndromic microphthalmia 6 (ortholog); FOUND IN endoplasmic reticulum (inferred); intracellular membrane-bounded organelle (inferred); membrane (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cell growth regulator with RING finger domain protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1183,876,919 - 183,903,897 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11183,863,459 - 183,903,803 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CGRRF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1183,876,919 - 183,903,897 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11183,863,459 - 183,903,803 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CGRRF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381454,509,906 - 54,539,292 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1454,509,812 - 54,539,292 (+)EnsemblGRCh38hg38GRCh38
GRCh371454,976,624 - 55,006,010 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361454,046,337 - 54,075,084 (+)NCBINCBI36Build 36hg18NCBI36
Build 341454,046,336 - 54,075,084NCBI
Celera1435,026,117 - 35,054,859 (+)NCBICelera
Cytogenetic Map14q22.2NCBI
HuRef1435,139,231 - 35,168,038 (+)NCBIHuRef
CHM1_11454,915,302 - 54,944,048 (+)NCBICHM1_1
T2T-CHM13v2.01448,715,069 - 48,744,462 (+)NCBIT2T-CHM13v2.0
Cgrrf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391447,069,591 - 47,091,655 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1447,069,582 - 47,091,650 (+)EnsemblGRCm39 Ensembl
GRCm381446,832,134 - 46,854,198 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1446,832,125 - 46,854,193 (+)EnsemblGRCm38mm10GRCm38
MGSCv371447,451,919 - 47,473,865 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361445,754,121 - 45,776,067 (+)NCBIMGSCv36mm8
Celera1443,006,333 - 43,028,378 (+)NCBICelera
Cytogenetic Map14C1NCBI
cM Map1424.34NCBI
Cgrrf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81522,560,902 - 22,588,815 (+)NCBIGRCr8
mRatBN7.21520,088,564 - 20,109,042 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1520,088,571 - 20,109,037 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1522,869,313 - 22,889,742 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01523,827,307 - 23,847,736 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01522,077,598 - 22,098,042 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01523,619,176 - 23,639,622 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1523,619,123 - 23,639,628 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01527,562,664 - 27,583,110 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41522,683,387 - 22,703,833 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11522,699,086 - 22,719,533 (+)NCBI
Celera1520,486,913 - 20,507,359 (+)NCBICelera
Cytogenetic Map15p14NCBI
Cgrrf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554098,939,521 - 8,966,351 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554098,939,793 - 8,966,351 (-)NCBIChiLan1.0ChiLan1.0
CGRRF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21555,628,211 - 55,660,946 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11454,847,901 - 54,877,462 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01435,096,716 - 35,126,072 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11453,374,648 - 53,404,122 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1453,374,648 - 53,404,122 (+)Ensemblpanpan1.1panPan2
CGRRF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1830,419,716 - 30,449,616 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl830,419,772 - 30,448,577 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha830,188,309 - 30,218,202 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0830,676,833 - 30,706,769 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl830,676,881 - 30,706,946 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1830,280,955 - 30,310,909 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0830,357,426 - 30,387,463 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0830,723,002 - 30,753,117 (+)NCBIUU_Cfam_GSD_1.0
Cgrrf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864074,797,701 - 74,831,731 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936697569,148 - 605,945 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936697573,477 - 605,899 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CGRRF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12431,686,757 - 31,715,593 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605319,916,271 - 19,944,701 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cgrrf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473114,760,426 - 14,787,582 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473114,761,560 - 14,790,277 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CGRRF1
847 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 7 3 1 7 2
Low 3 4 4 2 16 2 1 3
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000027967   ⟹   ENSSSCP00000021693
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1183,876,919 - 183,903,897 (+)Ensembl
RefSeq Acc Id: XM_021102210   ⟹   XP_020957869
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11183,876,859 - 183,903,803 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021102212   ⟹   XP_020957871
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11183,873,455 - 183,903,803 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021102214   ⟹   XP_020957873
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11183,863,485 - 183,903,798 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021102217   ⟹   XP_020957876
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11183,876,910 - 183,903,803 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002346942
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11183,863,459 - 183,903,793 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020957873   ⟸   XM_021102214
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_020957871   ⟸   XM_021102212
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_020957869   ⟸   XM_021102210
- Peptide Label: isoform X1
- UniProtKB: A0A4X1WE40 (UniProtKB/TrEMBL),   I3LCB8 (UniProtKB/TrEMBL),   A0A8D0JSM1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020957876   ⟸   XM_021102217
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSSSCP00000021693   ⟸   ENSSSCT00000027967
Protein Domains
RING-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000021451 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005033040 UniProtKB/TrEMBL
  ENSSSCG00015049878 UniProtKB/TrEMBL
  ENSSSCG00025064762 UniProtKB/TrEMBL
  ENSSSCG00030038605 UniProtKB/TrEMBL
  ENSSSCG00035028512 UniProtKB/TrEMBL
  ENSSSCG00040059935 UniProtKB/TrEMBL
  ENSSSCG00045008084 UniProtKB/TrEMBL
  ENSSSCG00050027184 UniProtKB/TrEMBL
  ENSSSCG00055029526 UniProtKB/TrEMBL
  ENSSSCG00060041161 UniProtKB/TrEMBL
  ENSSSCG00065006705 UniProtKB/TrEMBL
  ENSSSCG00070030596 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000027967 ENTREZGENE
  ENSSSCT00000027967.3 UniProtKB/TrEMBL
  ENSSSCT00005052741.1 UniProtKB/TrEMBL
  ENSSSCT00005052775.1 UniProtKB/TrEMBL
  ENSSSCT00005052808.1 UniProtKB/TrEMBL
  ENSSSCT00015066436.1 UniProtKB/TrEMBL
  ENSSSCT00025088828.1 UniProtKB/TrEMBL
  ENSSSCT00030053728.1 UniProtKB/TrEMBL
  ENSSSCT00035037703.1 UniProtKB/TrEMBL
  ENSSSCT00040081500.1 UniProtKB/TrEMBL
  ENSSSCT00045013580.1 UniProtKB/TrEMBL
  ENSSSCT00050036568.1 UniProtKB/TrEMBL
  ENSSSCT00055058645.1 UniProtKB/TrEMBL
  ENSSSCT00060055782.1 UniProtKB/TrEMBL
  ENSSSCT00065009015.1 UniProtKB/TrEMBL
  ENSSSCT00070061592.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
InterPro CGRF1 UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
NCBI Gene CGRRF1 ENTREZGENE
PANTHER CELL GROWTH REGULATOR WITH RING FINGER DOMAIN PROTEIN 1 UniProtKB/TrEMBL
  PTHR15379 UniProtKB/TrEMBL
Pfam zf-C3HC4_3 UniProtKB/TrEMBL
PROSITE ZF_RING_2 UniProtKB/TrEMBL
SMART RING UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/TrEMBL
UniProt A0A4X1WE40 ENTREZGENE
  A0A8D0JSM1 ENTREZGENE, UniProtKB/TrEMBL
  I3LCB8 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A4X1WE40 UniProtKB/TrEMBL
VGNC ID VGNC:86617 ENTREZGENE