LOC110261298 (vomeronasal type-1 receptor 4-like) - Rat Genome Database

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Pathways
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Gene: LOC110261298 (vomeronasal type-1 receptor 4-like) Sus scrofa
Analyze
Symbol: LOC110261298
Name: vomeronasal type-1 receptor 4-like
RGD ID: 14150562
Description: ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); pheromone receptor activity (inferred); INVOLVED IN G protein-coupled receptor signaling pathway (inferred); response to pheromone (inferred); sensory perception of chemical stimulus (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1657,751,417 - 57,752,358 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC110261298
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1657,751,417 - 57,752,358 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
VN1R4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381953,266,676 - 53,267,723 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1953,266,676 - 53,267,723 (-)EnsemblGRCh38hg38GRCh38
GRCh371953,769,929 - 53,770,976 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361958,461,825 - 58,462,730 (-)NCBINCBI36Build 36hg18NCBI36
Build 341958,461,824 - 58,462,730NCBI
Celera1950,811,899 - 50,812,804 (-)NCBICelera
Cytogenetic Map19q13.42NCBI
HuRef1950,090,647 - 50,091,552 (-)NCBIHuRef
CHM1_11953,771,924 - 53,772,829 (-)NCBICHM1_1
T2T-CHM13v2.01956,346,170 - 56,347,217 (-)NCBIT2T-CHM13v2.0
Vom1r21
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8169,636,830 - 69,637,753 (+)NCBIGRCr8
mRatBN7.2160,963,939 - 60,964,862 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl160,961,052 - 60,970,529 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01928,377,249 - 28,378,118 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1928,377,249 - 28,378,118 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01939,317,209 - 39,318,078 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4158,877,734 - 58,878,603 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1158,880,678 - 58,881,548 (+)NCBI
Celera157,082,890 - 57,083,759 (+)NCBICelera
Cytogenetic Map1q12NCBI

Variants

.
Variants in LOC110261298
17 total Variants

Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021097278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_021097278   ⟹   XP_020952937
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1657,751,417 - 57,752,358 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020952937 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000080087.1
  ENSSSCP00005008423.1
  ENSSSCP00015037730.1
  ENSSSCP00030032074.1
  ENSSSCP00035004185.1
  ENSSSCP00040036331.1
  ENSSSCP00045035926.1
Reference Protein Sequences
RefSeq Acc Id: XP_020952937   ⟸   XM_021097278
- UniProtKB: A0A8D1IN07 (UniProtKB/TrEMBL),   A0A8D0XAQ7 (UniProtKB/TrEMBL),   A0A8D0YM00 (UniProtKB/TrEMBL),   A0A8D1FGB2 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
G-protein coupled receptors family 1 profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000063300 UniProtKB/TrEMBL
  ENSSSCG00005009254 UniProtKB/TrEMBL
  ENSSSCG00015068886 UniProtKB/TrEMBL
  ENSSSCG00030050462 UniProtKB/TrEMBL
  ENSSSCG00035009886 UniProtKB/TrEMBL
  ENSSSCG00040061274 UniProtKB/TrEMBL
  ENSSSCG00045030298 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000096721.1 UniProtKB/TrEMBL
  ENSSSCT00005014137.1 UniProtKB/TrEMBL
  ENSSSCT00015092250.1 UniProtKB/TrEMBL
  ENSSSCT00030070326.1 UniProtKB/TrEMBL
  ENSSSCT00035012368.1 UniProtKB/TrEMBL
  ENSSSCT00040083378.1 UniProtKB/TrEMBL
  ENSSSCT00045051647.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Vmron_rcpt_1 UniProtKB/TrEMBL
NCBI Gene LOC110261298 ENTREZGENE
PANTHER PTHR24062 UniProtKB/TrEMBL
  VOMERONASAL TYPE-1 RECEPTOR 4 UniProtKB/TrEMBL
Pfam V1R UniProtKB/TrEMBL
PRINTS VOMERONASL1R UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A8D0I963_PIG UniProtKB/TrEMBL
  A0A8D0PX19_PIG UniProtKB/TrEMBL
  A0A8D0XAQ7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0YM00 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1FGB2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1IN07 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FLK0_PIG UniProtKB/TrEMBL