DCHS1 (dachsous cadherin-related 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: DCHS1 (dachsous cadherin-related 1) Sus scrofa
Analyze
Symbol: DCHS1
Name: dachsous cadherin-related 1
RGD ID: 14149196
Description: INVOLVED IN anatomical structure morphogenesis (ortholog); branching involved in ureteric bud morphogenesis (ortholog); cell migration (ortholog); ASSOCIATED WITH Developmental Disabilities (ortholog); genetic disease (ortholog); Myxomatous Mitral Valve Prolapse 2 (ortholog); FOUND IN apical part of cell (inferred); integral component of membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Also known as: dachsous 1; LOW QUALITY PROTEIN: protocadherin-16
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl93,113,451 - 3,134,821 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.193,099,525 - 3,134,825 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.293,765,872 - 3,792,053 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712  


Genomics

Comparative Map Data
DCHS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl93,113,451 - 3,134,821 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.193,099,525 - 3,134,825 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.293,765,872 - 3,792,053 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DCHS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl116,621,330 - 6,655,809 (-)EnsemblGRCh38hg38GRCh38
GRCh38116,621,330 - 6,655,809 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37116,642,561 - 6,677,040 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36116,599,134 - 6,633,656 (-)NCBINCBI36hg18NCBI36
Build 34116,599,133 - 6,633,431NCBI
Celera116,761,623 - 6,801,774 (-)NCBI
Cytogenetic Map11p15.4NCBI
HuRef116,301,489 - 6,321,899 (-)NCBIHuRef
CHM1_1116,641,456 - 6,675,831 (-)NCBICHM1_1
Dchs1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397105,402,196 - 105,437,562 (-)NCBIGRCm39mm39
GRCm39 Ensembl7105,402,197 - 105,436,861 (-)Ensembl
GRCm387105,752,989 - 105,788,355 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7105,752,990 - 105,787,654 (-)EnsemblGRCm38mm10GRCm38
MGSCv377112,901,503 - 112,936,064 (-)NCBIGRCm37mm9NCBIm37
MGSCv367105,626,810 - 105,661,745 (-)NCBImm8
Celera7106,024,342 - 106,044,662 (-)NCBICelera
Cytogenetic Map7E3NCBI
Dchs1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21160,104,931 - 160,138,958 (-)NCBI
Rnor_6.0 Ensembl1170,594,822 - 170,628,915 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01170,594,981 - 170,629,062 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01177,600,833 - 177,634,911 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41163,497,340 - 163,517,217 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11163,593,288 - 163,612,580 (-)NCBI
Celera1158,036,763 - 158,056,640 (-)NCBICelera
Cytogenetic Map1q32NCBI
Dchs1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541422,332,059 - 22,351,576 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541422,331,590 - 22,365,761 (-)NCBIChiLan1.0ChiLan1.0
DCHS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1116,436,082 - 6,456,464 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl116,436,536 - 6,456,352 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0116,753,383 - 6,787,896 (-)NCBIMhudiblu_PPA_v0panPan3
DCHS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12129,927,713 - 29,955,742 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2129,928,176 - 29,948,713 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2129,629,571 - 29,664,439 (-)NCBI
ROS_Cfam_1.02130,753,896 - 30,788,761 (-)NCBI
UMICH_Zoey_3.12130,074,653 - 30,109,506 (-)NCBI
UNSW_CanFamBas_1.02130,240,306 - 30,275,200 (-)NCBI
UU_Cfam_GSD_1.02130,435,640 - 30,470,548 (-)NCBI
Dchs1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494755,970,003 - 55,998,070 (+)NCBI
SpeTri2.0NW_004936842677,416 - 697,013 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DCHS1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1158,170,494 - 58,204,156 (+)NCBI
ChlSab1.1 Ensembl158,184,591 - 58,205,962 (+)Ensembl
Dchs1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248178,111,714 - 8,147,699 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 4 4 1 5 2 20 2 3 1
Below cutoff 6 2 3

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000025039   ⟹   ENSSSCP00000027872
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl93,113,451 - 3,134,821 (+)Ensembl
RefSeq Acc Id: XM_021062333   ⟹   XP_020917992
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.193,099,525 - 3,134,825 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020917992 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_020917992   ⟸   XM_021062333
- Sequence:
RefSeq Acc Id: ENSSSCP00000027872   ⟸   ENSSSCT00000025039
Protein Domains
Cadherin


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000029189 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070001121 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000027872 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00070001820 UniProtKB/TrEMBL
  ENSSSCP00070001835 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000025039 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00070002173 UniProtKB/TrEMBL
  ENSSSCT00070002190 UniProtKB/TrEMBL
InterPro Cadherin UniProtKB/TrEMBL
  Cadherin-like_dom UniProtKB/TrEMBL
  Cadherin-like_sf UniProtKB/TrEMBL
  Cadherin_CS UniProtKB/TrEMBL
NCBI Gene DCHS1 ENTREZGENE
PANTHER PTHR24027 UniProtKB/TrEMBL
Pfam Cadherin UniProtKB/TrEMBL
PRINTS CADHERIN UniProtKB/TrEMBL
PROSITE CADHERIN_1 UniProtKB/TrEMBL
  CADHERIN_2 UniProtKB/TrEMBL
SMART SM00112 UniProtKB/TrEMBL
Superfamily-SCOP SSF49313 UniProtKB/TrEMBL
UniProt A0A4X1SHP4_PIG UniProtKB/TrEMBL
  A0A4X1SHR2_PIG UniProtKB/TrEMBL
  I3LUS1_PIG UniProtKB/TrEMBL
VGNC ID VGNC:97959 ENTREZGENE