GLDC (glycine decarboxylase) - Rat Genome Database

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Gene: GLDC (glycine decarboxylase) Sus scrofa
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Symbol: GLDC
Name: glycine decarboxylase
RGD ID: 14147214
Description: ENCODES a protein that exhibits enzyme binding (ortholog); glycine binding (ortholog); glycine dehydrogenase (decarboxylating) activity (ortholog); INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); glycine decarboxylation via glycine cleavage system (ortholog); protein-containing complex assembly (ortholog); PARTICIPATES IN dihydropyrimidine dehydrogenase deficiency pathway; dimethylglycine dehydrogenase deficiency pathway; folate cycle metabolic pathway; ASSOCIATED WITH chromosome 9p deletion syndrome (ortholog); COVID-19 (ortholog); Developmental Disabilities (ortholog); FOUND IN glycine cleavage complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: glycine dehydrogenase (decarboxylating); glycine dehydrogenase (decarboxylating), mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1215,608,849 - 215,715,059 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11215,608,854 - 215,715,062 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
GLDC
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1215,608,849 - 215,715,059 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11215,608,854 - 215,715,062 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
GLDC
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3896,532,467 - 6,645,729 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl96,532,467 - 6,645,729 (-)EnsemblGRCh38hg38GRCh38
GRCh3796,532,467 - 6,645,729 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3696,522,464 - 6,635,692 (-)NCBINCBI36Build 36hg18NCBI36
Build 3496,522,468 - 6,635,650NCBI
Celera96,469,938 - 6,583,174 (-)NCBICelera
Cytogenetic Map9p24.1NCBI
HuRef96,487,440 - 6,600,082 (-)NCBIHuRef
CHM1_196,533,234 - 6,646,419 (-)NCBICHM1_1
T2T-CHM13v2.096,537,521 - 6,650,780 (-)NCBIT2T-CHM13v2.0
Gldc
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391930,075,847 - 30,152,829 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1930,075,847 - 30,152,829 (-)EnsemblGRCm39 Ensembl
GRCm381930,098,441 - 30,175,441 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1930,098,447 - 30,175,429 (-)EnsemblGRCm38mm10GRCm38
MGSCv371930,172,937 - 30,249,908 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361930,164,444 - 30,241,415 (-)NCBIMGSCv36mm8
Celera1930,873,665 - 30,951,190 (-)NCBICelera
Cytogenetic Map19C1NCBI
cM Map1924.87NCBI
Gldc
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81237,296,753 - 237,375,620 (-)NCBIGRCr8
mRatBN7.21227,883,249 - 227,962,119 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1227,883,249 - 227,962,097 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1236,285,270 - 236,364,242 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01243,214,954 - 243,293,934 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01236,037,217 - 236,116,284 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01248,295,140 - 248,377,122 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1248,297,331 - 248,377,093 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01255,544,863 - 255,624,599 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41233,846,690 - 233,925,736 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11234,011,236 - 234,089,583 (-)NCBI
Celera1225,029,994 - 225,108,807 (-)NCBICelera
Cytogenetic Map1q52NCBI
Gldc
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543410,431,983 - 10,533,002 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543410,431,434 - 10,533,118 (-)NCBIChiLan1.0ChiLan1.0
GLDC
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v211117,935,713 - 118,045,297 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan19117,941,661 - 118,051,245 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v096,347,381 - 6,456,042 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.196,527,242 - 6,635,778 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl96,527,242 - 6,635,779 (-)Ensemblpanpan1.1panPan2
GLDC
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11127,491,639 - 27,584,450 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1127,414,834 - 27,584,450 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1126,274,927 - 26,367,677 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01128,350,544 - 28,443,332 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1128,265,114 - 28,443,675 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11127,074,254 - 27,167,008 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01126,893,508 - 26,986,195 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01127,562,632 - 27,654,945 (-)NCBIUU_Cfam_GSD_1.0
Gldc
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947142,555,653 - 142,642,377 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365391,007,820 - 1,095,054 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365391,008,340 - 1,095,044 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GLDC
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11272,876,992 - 72,990,671 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1272,877,017 - 72,990,668 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603861,215,190 - 61,329,981 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gldc
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473611,022,691 - 11,134,377 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473611,022,691 - 11,133,950 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in GLDC
2138 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1
Low 5 2 3 5 2 23 1 1
Below cutoff 5 2 2 1 2

Sequence


RefSeq Acc Id: ENSSSCT00000005731   ⟹   ENSSSCP00000005589
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1215,608,849 - 215,715,059 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000090547   ⟹   ENSSSCP00000063351
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1215,608,890 - 215,715,048 (+)Ensembl
RefSeq Acc Id: XM_021063878   ⟹   XP_020919537
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11215,608,854 - 215,715,062 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020919537   ⟸   XM_021063878
- UniProtKB: A0A480TLS3 (UniProtKB/TrEMBL),   A0A4X1W3T0 (UniProtKB/TrEMBL),   A0A8D1SRM8 (UniProtKB/TrEMBL),   F1SMN8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000005589   ⟸   ENSSSCT00000005731
RefSeq Acc Id: ENSSSCP00000063351   ⟸   ENSSSCT00000090547

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000005199 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025043083 UniProtKB/TrEMBL
  ENSSSCG00030004552 UniProtKB/TrEMBL
  ENSSSCG00035033087 UniProtKB/TrEMBL
  ENSSSCG00045004216 UniProtKB/TrEMBL
  ENSSSCG00050021357 UniProtKB/TrEMBL
  ENSSSCG00055028081 UniProtKB/TrEMBL
  ENSSSCG00060009850 UniProtKB/TrEMBL
  ENSSSCG00065013543 UniProtKB/TrEMBL
  ENSSSCG00070029751 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000005731 ENTREZGENE
  ENSSSCT00000005731.5 UniProtKB/TrEMBL
  ENSSSCT00000090547.1 UniProtKB/TrEMBL
  ENSSSCT00025058803.1 UniProtKB/TrEMBL
  ENSSSCT00025059497.1 UniProtKB/TrEMBL
  ENSSSCT00030006093.1 UniProtKB/TrEMBL
  ENSSSCT00030006099.1 UniProtKB/TrEMBL
  ENSSSCT00035043834.1 UniProtKB/TrEMBL
  ENSSSCT00035043852.1 UniProtKB/TrEMBL
  ENSSSCT00035043864.1 UniProtKB/TrEMBL
  ENSSSCT00045007034.1 UniProtKB/TrEMBL
  ENSSSCT00045007040.1 UniProtKB/TrEMBL
  ENSSSCT00050028834.1 UniProtKB/TrEMBL
  ENSSSCT00050028848.1 UniProtKB/TrEMBL
  ENSSSCT00055055819.1 UniProtKB/TrEMBL
  ENSSSCT00055055941.1 UniProtKB/TrEMBL
  ENSSSCT00060012763.1 UniProtKB/TrEMBL
  ENSSSCT00060012771.1 UniProtKB/TrEMBL
  ENSSSCT00065018033.1 UniProtKB/TrEMBL
  ENSSSCT00065018044.1 UniProtKB/TrEMBL
  ENSSSCT00070059801.1 UniProtKB/TrEMBL
  ENSSSCT00070059807.1 UniProtKB/TrEMBL
  ENSSSCT00070059813.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.640.10 UniProtKB/TrEMBL
  3.90.1150.10 UniProtKB/TrEMBL
InterPro ArAA_b-elim_lyase/Thr_aldolase UniProtKB/TrEMBL
  GcvP UniProtKB/TrEMBL
  GDC-P_C UniProtKB/TrEMBL
  GDC-P_N UniProtKB/TrEMBL
  GDC_P UniProtKB/TrEMBL
  PyrdxlP-dep_Trfase UniProtKB/TrEMBL
  PyrdxlP-dep_Trfase_dom1 UniProtKB/TrEMBL
  PyrdxlP-dep_Trfase_major UniProtKB/TrEMBL
NCBI Gene GLDC ENTREZGENE
PANTHER GLYCINE DEHYDROGENASE (DECARBOXYLATING), MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR11773 UniProtKB/TrEMBL
Pfam Beta_elim_lyase UniProtKB/TrEMBL
  GcvP2_C UniProtKB/TrEMBL
  GDC-P UniProtKB/TrEMBL
Superfamily-SCOP SSF53383 UniProtKB/TrEMBL
UniProt A0A480TLS3 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1W3T0 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1W965_PIG UniProtKB/TrEMBL
  A0A4X1W970_PIG UniProtKB/TrEMBL
  A0A5G2QHK8_PIG UniProtKB/TrEMBL
  A0A8D0V9B6_PIG UniProtKB/TrEMBL
  A0A8D0ZNU8_PIG UniProtKB/TrEMBL
  A0A8D1GK42_PIG UniProtKB/TrEMBL
  A0A8D1SRM8 ENTREZGENE, UniProtKB/TrEMBL
  F1SMN8 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:88478 ENTREZGENE