B3GAT2 (beta-1,3-glucuronyltransferase 2) - Rat Genome Database

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Gene: B3GAT2 (beta-1,3-glucuronyltransferase 2) Sus scrofa
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Symbol: B3GAT2
Name: beta-1,3-glucuronyltransferase 2
RGD ID: 14146840
Description: ENCODES a protein that exhibits galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity (ortholog); INVOLVED IN carbohydrate biosynthetic process (ortholog); ASSOCIATED WITH Barrett's esophagus (ortholog); schizophrenia (ortholog); Venous Thromboembolism (ortholog); FOUND IN Golgi apparatus (inferred); Golgi membrane (inferred); integral component of membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S); galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl150,938,251 - 51,041,583 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1150,941,967 - 51,041,586 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2157,280,055 - 57,379,177 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
B3GAT2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl150,938,251 - 51,041,583 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1150,941,967 - 51,041,586 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2157,280,055 - 57,379,177 (-)NCBISscrofa10.2Sscrofa10.2susScr3
B3GAT2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38670,856,679 - 70,957,060 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl670,856,679 - 70,957,060 (-)EnsemblGRCh38hg38GRCh38
GRCh37671,566,382 - 71,666,763 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36671,627,790 - 71,723,509 (-)NCBINCBI36hg18NCBI36
Build 34671,628,086 - 71,722,853NCBI
Celera671,959,433 - 72,055,143 (-)NCBI
Cytogenetic Map6q13NCBI
HuRef668,769,278 - 68,864,888 (-)NCBIHuRef
CHM1_1671,737,354 - 71,833,061 (-)NCBICHM1_1
T2T-CHM13v2.0672,037,217 - 72,137,607 (-)NCBI
B3gat2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39123,801,007 - 23,886,946 (+)NCBIGRCm39mm39
GRCm39 Ensembl123,800,834 - 23,888,239 (+)Ensembl
GRCm38123,761,926 - 23,847,865 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl123,761,753 - 23,849,158 (+)EnsemblGRCm38mm10GRCm38
MGSCv37123,768,765 - 23,854,704 (+)NCBIGRCm37mm9NCBIm37
MGSCv36123,716,201 - 23,802,140 (+)NCBImm8
Celera123,601,584 - 23,685,031 (+)NCBICelera
Cytogenetic Map1A5NCBI
B3gat2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2926,167,174 - 26,250,153 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl926,167,174 - 26,250,153 (+)Ensembl
Rnor_6.0929,984,077 - 30,068,649 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl929,984,077 - 30,068,649 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0928,816,204 - 28,899,282 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera923,707,399 - 23,790,189 (+)NCBICelera
Cytogenetic Map9q13NCBI
B3gat2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554885,866,148 - 5,926,567 (-)NCBIChiLan1.0ChiLan1.0
B3GAT2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1671,990,946 - 72,085,924 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v0668,691,690 - 68,790,992 (-)NCBIMhudiblu_PPA_v0panPan3
B3GAT2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11233,321,691 - 33,400,516 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1233,321,208 - 33,401,171 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1233,180,547 - 33,259,383 (-)NCBI
ROS_Cfam_1.01233,861,787 - 33,940,602 (-)NCBI
ROS_Cfam_1.0 Ensembl1233,857,313 - 33,941,358 (-)Ensembl
UMICH_Zoey_3.11233,391,274 - 33,470,107 (-)NCBI
UNSW_CanFamBas_1.01233,433,981 - 33,513,113 (-)NCBI
UU_Cfam_GSD_1.01233,546,110 - 33,624,997 (-)NCBI
B3gat2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494668,541,493 - 68,616,253 (-)NCBI
SpeTri2.0NW_0049366182,703,445 - 2,773,598 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
B3GAT2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1174,080,648 - 4,150,371 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl174,081,403 - 4,149,335 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605810,081,878 - 10,155,523 (+)NCBIVero_WHO_p1.0
B3gat2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248199,018,682 - 9,098,927 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046248199,018,689 - 9,099,645 (+)NCBIHetGla_female_1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 10 2 3 5 1 23 1 3 3
Below cutoff 2 1 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000024170   ⟹   ENSSSCP00000026563
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl150,938,251 - 51,041,583 (-)Ensembl
RefSeq Acc Id: XM_003121263   ⟹   XP_003121311
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1150,941,967 - 51,041,586 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021089488   ⟹   XP_020945147
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1150,987,817 - 51,041,083 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021089491   ⟹   XP_020945150
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1151,031,534 - 51,041,083 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003121311 (Get FASTA)   NCBI Sequence Viewer  
  XP_020945147 (Get FASTA)   NCBI Sequence Viewer  
  XP_020945150 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003121311   ⟸   XM_003121263
- Peptide Label: isoform X1
- UniProtKB: I3LR31 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020945147   ⟸   XM_021089488
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_020945150   ⟸   XM_021089491
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSSSCP00000026563   ⟸   ENSSSCT00000024170


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000026246 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000026563 ENTREZGENE
  ENSSSCP00000026563.2 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000024170 ENTREZGENE
  ENSSSCT00000024170.3 UniProtKB/TrEMBL
Gene3D-CATH 3.90.550.10 UniProtKB/TrEMBL
InterPro Glyco_trans_43 UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/TrEMBL
KEGG Report ssc:100526195 UniProtKB/TrEMBL
NCBI Gene B3GAT2 ENTREZGENE
PANTHER PTHR10896 UniProtKB/TrEMBL
Pfam Glyco_transf_43 UniProtKB/TrEMBL
Superfamily-SCOP SSF53448 UniProtKB/TrEMBL
UniProt I3LR31 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:85720 ENTREZGENE