CA14 (carbonic anhydrase 14) - Rat Genome Database

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Gene: CA14 (carbonic anhydrase 14) Sus scrofa
Analyze
Symbol: CA14
Name: carbonic anhydrase 14
RGD ID: 14146733
Description: ENCODES a protein that exhibits carbonate dehydratase activity (inferred); zinc ion binding (inferred); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN integral component of membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl498,821,578 - 98,828,736 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1498,821,577 - 98,828,934 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
CA14
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl498,821,578 - 98,828,736 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1498,821,577 - 98,828,934 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CA14
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1150,257,251 - 150,265,078 (+)EnsemblGRCh38hg38GRCh38
GRCh381150,257,258 - 150,265,862 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371150,230,169 - 150,237,478 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361148,488,047 - 148,504,102 (+)NCBINCBI36hg18NCBI36
Build 341147,043,290 - 147,050,549NCBI
Celera1123,345,949 - 123,353,209 (+)NCBI
Cytogenetic Map1q21.2NCBI
HuRef1121,608,885 - 121,616,145 (+)NCBIHuRef
CHM1_11151,625,869 - 151,633,204 (+)NCBICHM1_1
Car14
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39395,805,080 - 95,812,443 (-)NCBIGRCm39mm39
GRCm39 Ensembl395,805,080 - 95,812,003 (-)Ensembl
GRCm38395,897,768 - 95,905,117 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl395,897,768 - 95,904,691 (-)EnsemblGRCm38mm10GRCm38
MGSCv37395,701,723 - 95,708,562 (-)NCBIGRCm37mm9NCBIm37
MGSCv36395,983,205 - 95,990,044 (-)NCBImm8
Celera397,331,353 - 97,338,218 (-)NCBICelera
Cytogenetic Map3F2.1NCBI
Ca14
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22183,442,263 - 183,449,207 (-)NCBI
Rnor_6.0 Ensembl2198,010,349 - 198,016,898 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.02198,010,142 - 198,017,635 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02217,500,302 - 217,507,935 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42190,683,916 - 190,690,229 (-)NCBIRGSC3.4rn4RGSC3.4
Celera2175,971,924 - 175,978,237 (-)NCBICelera
Cytogenetic Map2q34NCBI
Ca14
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955413510,089 - 516,892 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955413510,089 - 516,892 (-)NCBIChiLan1.0ChiLan1.0
CA14
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11129,253,787 - 129,261,676 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1129,253,787 - 129,261,676 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01125,602,521 - 125,610,323 (+)NCBIMhudiblu_PPA_v0panPan3
CA14
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11759,504,181 - 59,510,497 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1759,504,483 - 59,510,127 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1758,950,038 - 58,956,854 (+)NCBI
ROS_Cfam_1.01760,519,100 - 60,525,928 (+)NCBI
UMICH_Zoey_3.11759,349,547 - 59,356,380 (+)NCBI
UNSW_CanFamBas_1.01759,433,284 - 59,440,110 (+)NCBI
UU_Cfam_GSD_1.01760,161,286 - 60,168,105 (+)NCBI
Ca14
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505821,514,788 - 21,521,689 (+)NCBI
SpeTri2.0NW_004936580545,221 - 552,071 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CA14
(Chlorocebus sabaeus - African green monkey)
No map positions available.
Ca14
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477218,011,094 - 18,018,585 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 1 1
Low 6 2 2 1 19 1
Below cutoff 3 2 3 3 3 2 2 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000028733   ⟹   ENSSSCP00000019323
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl498,821,578 - 98,828,736 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000037018   ⟹   ENSSSCP00000049620
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl498,821,578 - 98,827,843 (-)Ensembl
RefSeq Acc Id: XM_021089915   ⟹   XP_020945574
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1498,821,577 - 98,828,844 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021089916   ⟹   XP_020945575
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1498,821,577 - 98,828,822 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021089917   ⟹   XP_020945576
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1498,821,577 - 98,828,836 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021089918   ⟹   XP_020945577
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1498,821,577 - 98,828,859 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002343445
RefSeq Status:
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1498,821,577 - 98,828,934 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002343446
RefSeq Status:
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1498,821,577 - 98,828,899 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002343447
RefSeq Status:
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1498,821,577 - 98,828,931 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020945574 (Get FASTA)   NCBI Sequence Viewer  
  XP_020945575 (Get FASTA)   NCBI Sequence Viewer  
  XP_020945576 (Get FASTA)   NCBI Sequence Viewer  
  XP_020945577 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_020945577   ⟸   XM_021089918
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_020945574   ⟸   XM_021089915
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020945576   ⟸   XM_021089917
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_020945575   ⟸   XM_021089916
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSSSCP00000049620   ⟸   ENSSSCT00000037018
RefSeq Acc Id: ENSSSCP00000019323   ⟸   ENSSSCT00000028733
Protein Domains
Alpha-carbonic anhydrase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000027875 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070001030 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000019323 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000049620 UniProtKB/TrEMBL
  ENSSSCP00070001628 UniProtKB/TrEMBL
  ENSSSCP00070001640 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000028733 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000037018 UniProtKB/TrEMBL
  ENSSSCT00070001951 UniProtKB/TrEMBL
  ENSSSCT00070001965 UniProtKB/TrEMBL
Gene3D-CATH 3.10.200.10 UniProtKB/TrEMBL
InterPro CA_dom UniProtKB/TrEMBL
  CA_dom_sf UniProtKB/TrEMBL
  Carbonic_anhydrase_a-class UniProtKB/TrEMBL
  Carbonic_anhydrase_CA14 UniProtKB/TrEMBL
NCBI Gene CA14 ENTREZGENE
PANTHER PTHR18952 UniProtKB/TrEMBL
  PTHR18952:SF84 UniProtKB/TrEMBL
Pfam Carb_anhydrase UniProtKB/TrEMBL
PROSITE ALPHA_CA_2 UniProtKB/TrEMBL
SMART Carb_anhydrase UniProtKB/TrEMBL
Superfamily-SCOP SSF51069 UniProtKB/TrEMBL
UniProt A0A287B0I5_PIG UniProtKB/TrEMBL
  A0A4X1SH73_PIG UniProtKB/TrEMBL
  A0A4X1SHV3_PIG UniProtKB/TrEMBL
  I3L5M4_PIG UniProtKB/TrEMBL
VGNC ID VGNC:86098 ENTREZGENE