PPP3R2 (protein phosphatase 3 regulatory subunit B, beta)

Gene: PPP3R2 (protein phosphatase 3 regulatory subunit B, beta) Sus scrofa

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Symbol:

PPP3R2

Name:

protein phosphatase 3 regulatory subunit B, beta

RGD ID:

14146107

Description:

ENCODES a protein that exhibits calcium-dependent protein serine/threonine phosphatase regulator activity (ortholog); INVOLVED IN penetration of zona pellucida (ortholog); PARTICIPATES IN calcineurin signaling pathway; ASSOCIATED WITH fructose-1,6-bisphosphatase deficiency (ortholog); genetic disease (ortholog); hereditary fructose intolerance syndrome (ortholog); FOUND IN calcineurin complex (ortholog); sperm flagellum (ortholog); sperm midpiece (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

calcineurin subunit B type 2; protein phosphatase 3 regulatory subunit B beta isoform

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	1	243,284,383 - 243,285,358 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

fructose-1,6-bisphosphatase deficiency (ISO)

genetic disease (ISO)

hereditary fructose intolerance syndrome (ISO)

intellectual disability (ISO)

traumatic brain injury (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

penetration of zona pellucida (ISO)

Cellular Component

calcineurin complex (ISO)

sperm flagellum (ISO)

sperm midpiece (ISO)

sperm mitochondrial sheath (ISO)

Molecular Function

calcium ion binding (IEA)

calcium-dependent protein serine/threonine phosphatase regulator activity (ISO)

metal ion binding (IEA)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

calcineurin signaling pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

PPP3R2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	1	243,284,383 - 243,285,358 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

PPP3R2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	101,591,604 - 101,594,969 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	101,591,604 - 101,595,021 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	104,353,886 - 104,357,251 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	103,393,718 - 103,397,104 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	9	101,433,453 - 101,436,838	NCBI
Celera	9	74,868,152 - 74,871,538 (-)	NCBI		Celera
Cytogenetic Map	9	q31.1	NCBI
HuRef	9	73,954,645 - 73,958,031 (-)	NCBI		HuRef
CHM1_1	9	104,500,302 - 104,503,688 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	9	113,766,356 - 113,769,721 (-)	NCBI		T2T-CHM13v2.0

Ppp3r2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	49,678,747 - 49,681,983 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	49,678,747 - 49,682,024 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	49,678,747 - 49,681,983 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	49,678,747 - 49,682,024 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	49,691,619 - 49,694,855 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	49,699,847 - 49,703,083 (-)	NCBI		MGSCv36	mm8
Celera	4	49,707,048 - 49,710,284 (-)	NCBI		Celera
Cytogenetic Map	4	B1	NCBI
cM Map	4	26.75	NCBI

Ppp3r2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	68,822,387 - 68,823,382 (-)	NCBI		GRCr8
mRatBN7.2	5	64,026,903 - 64,027,898 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	64,026,903 - 64,032,548 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	65,960,061 - 65,961,056 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	67,779,403 - 67,780,398 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	67,748,770 - 67,749,765 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	64,945,583 - 64,946,578 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	64,945,583 - 64,946,580 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	69,437,021 - 69,438,016 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	66,423,374 - 66,424,369 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	66,428,486 - 66,429,482 (-)	NCBI
Celera	5	63,581,125 - 63,582,120 (+)	NCBI		Celera
Cytogenetic Map	5	q22	NCBI

Ppp3r2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955419	24,252,772 - 24,253,730 (+)	NCBI	ChiLan1.0	ChiLan1.0

PPP3R2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	37,766,051 - 37,775,517 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	37,768,423 - 37,775,533 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	72,796,099 - 72,799,499 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	100,789,939 - 100,793,366 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

PPP3R2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	11	58,295,237 - 58,295,942 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	11	56,739,743 - 56,740,445 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	11	59,430,834 - 59,431,536 (-)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	11	57,940,585 - 57,941,287 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	11	57,953,530 - 57,954,232 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	11	58,651,272 - 58,651,974 (-)	NCBI		UU_Cfam_GSD_1.0

Ppp3r2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	173,194,963 - 173,196,041 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936524	9,742,788 - 9,743,327 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PPP3R2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	37,838,156 - 37,841,477 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666035	4,714,461 - 4,717,519 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ppp3r2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624758	9,736,936 - 9,739,266 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624758	9,737,002 - 9,737,978 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in PPP3R2
28 total Variants

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003360804	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GU722152	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_003360804 ⟹ XP_003360852

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	1	243,284,383 - 243,285,358 (-)	NCBI

Sequence:

show sequence

TGCCTATTTGCTTGTCTGGAGGCGCGAGGATCCCGCGAGCCTGTCCCACCCAGCTCCCCCCAGC
GCCTGCGCCGCCACACCTCACCCCACCCCACCCTTCCAGGCAGCGCAACCGGCCCTCTCAAGCT
TCACGCGCACGCGCACCCGCCACCCTTCTTCCTCTTCCCACCCTGCGAACTGCCTGTGAGACAG
CTGGCTCCACCATGGGAAATGAGCCCAGTAACCCAATGGAGATGTGCTCCCAGTTTGACCAAAA
CGAAATTAAACAGCTGAGCAAGCGGTTTAAGAAGGTGGACTTGGACAGTTCGGGCACTCTGACT
ATGAAGGAGCTCATGTCCCTGCCGGGGCTGCAGGTGAACCCGTTGGTGCAGCGAGTGTTCGACA
TTTTCGACACAGACGGCAACGGAGAAGTGGACTTCAAGGAATTCCTCGTGGGGACCTCCCAGTT
CAGTGTCAAGGGCGACAAGGAGCAGAAGCTGAGGTTTGCTTTCAGCATCTATGACATGGACAAA
GACGGCTACATTTCCAACGGGGAGCTCTTCCAGGTGCTAAACATGATGGTGGGAGACAACCTGA
AAGACTGGCAGTTACAGCAGCTGGTGGACAAAACCATCATCGCCCTGGACAAGGATGGAGATGG
GAAAATATCCTTCCACGAATTCTGCGCTGTGGCCAGAAACCTGAAGGTCCACGAGAAATTGGGG
GTAATTGTGTGACCGTCTATAAGAGCACCACCCAACAACAACTTTTTCTTTCTTCTCTGTATCT
TTAAACATCAGCTCAAGAGGCCCTGCAACAATCTCTCTGACCTACTGGAAAGTACTTCTCTTTG
TGAAGCAACATTGTCTAACACCAGCCTCTTGACCACCTAAGTATTATTTATTACTTTGCTTTTA
ATGATTCAGGGTAATGCCCTGAGTTCAGGAGAACATGATGAAAGAGCAAGGGGAGAAAGAAATT
AAATGGCTTTTATGAA

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Protein Sequences


Protein RefSeqs	XP_003360852	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	ADX01255	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_003360852 ⟸ XM_003360804
- Sequence:	show sequence MGNEPSNPMEMCSQFDQNEIKQLSKRFKKVDLDSSGTLTMKELMSLPGLQVNPLVQRVFDIFDT DGNGEVDFKEFLVGTSQFSVKGDKEQKLRFAFSIYDMDKDGYISNGELFQVLNMMVGDNLKDWQ LQQLVDKTIIALDKDGDGKISFHEFCAVARNLKVHEKLGVIV hide sequence

Protein Domains

EF-hand

Additional Information

External Database Links

Database	Acc Id	Source(s)
Gene3D-CATH	EF-hand	UniProtKB/TrEMBL
InterPro	EF-hand-dom_pair	UniProtKB/TrEMBL
	EF_Hand_1_Ca_BS	UniProtKB/TrEMBL
	EF_hand_dom	UniProtKB/TrEMBL
NCBI Gene	PPP3R2	ENTREZGENE
Pfam	EF-hand_1	UniProtKB/TrEMBL
PROSITE	EF_HAND_1	UniProtKB/TrEMBL
	EF_HAND_2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47473	UniProtKB/TrEMBL
UniProt	V5IV83_PIG	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

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