SNX31 (sorting nexin 31) - Rat Genome Database

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Gene: SNX31 (sorting nexin 31) Sus scrofa
Analyze
Symbol: SNX31
Name: sorting nexin 31
RGD ID: 14145279
Description: ENCODES a protein that exhibits phosphatidylinositol binding (inferred); INVOLVED IN intracellular protein transport (inferred); ASSOCIATED WITH Cohen syndrome (ortholog); genetic disease (ortholog); FOUND IN early endosome (inferred); protein-containing complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: sorting nexin-31
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl436,303,284 - 36,388,952 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1436,303,313 - 36,390,214 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2439,227,961 - 39,312,750 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SNX31
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl436,303,284 - 36,388,952 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1436,303,313 - 36,390,214 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2439,227,961 - 39,312,750 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SNX31
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388100,572,874 - 100,663,585 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8100,572,889 - 100,663,415 (-)EnsemblGRCh38hg38GRCh38
GRCh378101,585,102 - 101,661,893 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368101,654,299 - 101,731,069 (-)NCBINCBI36Build 36hg18NCBI36
Celera897,770,483 - 97,847,271 (-)NCBICelera
Cytogenetic Map8q22.3NCBI
HuRef896,784,677 - 96,860,804 (-)NCBIHuRef
CHM1_18101,625,996 - 101,702,710 (-)NCBICHM1_1
T2T-CHM13v2.08101,698,913 - 101,789,632 (-)NCBIT2T-CHM13v2.0
Snx31
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391536,504,208 - 36,560,274 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1536,504,208 - 36,555,718 (-)EnsemblGRCm39 Ensembl
GRCm381536,504,062 - 36,560,129 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1536,504,062 - 36,555,573 (-)EnsemblGRCm38mm10GRCm38
MGSCv371536,433,817 - 36,485,327 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361536,448,651 - 36,500,161 (-)NCBIMGSCv36mm8
Celera1537,131,901 - 37,175,770 (-)NCBICelera
Cytogenetic Map15B3.1NCBI
cM Map1514.48NCBI
Snx31
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8769,560,948 - 69,662,015 (-)NCBIGRCr8
mRatBN7.2767,676,514 - 67,776,925 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl767,676,524 - 67,732,086 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0775,308,847 - 75,364,264 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl775,309,255 - 75,364,166 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0775,456,983 - 75,512,331 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4772,015,735 - 72,070,732 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1772,036,464 - 72,097,245 (-)NCBI
Celera764,756,762 - 64,803,973 (-)NCBICelera
Cytogenetic Map7q22NCBI
Snx31
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541715,778,838 - 15,835,733 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541715,779,500 - 15,835,668 (-)NCBIChiLan1.0ChiLan1.0
SNX31
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27117,916,360 - 118,003,407 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1893,462,508 - 93,539,295 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0897,216,289 - 97,293,064 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1899,389,353 - 99,465,796 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl899,389,362 - 99,465,796 (-)Ensemblpanpan1.1panPan2
SNX31
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1132,425,143 - 2,497,798 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl132,385,611 - 2,498,364 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha132,422,258 - 2,494,793 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0132,578,243 - 2,650,892 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl132,537,109 - 2,651,455 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1132,422,818 - 2,495,566 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0132,534,477 - 2,607,054 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0132,551,812 - 2,624,429 (-)NCBIUU_Cfam_GSD_1.0
Snx31
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530335,258,158 - 35,316,885 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647042,684,346 - 42,742,092 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647042,684,346 - 42,743,001 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNX31
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1895,427,818 - 95,515,132 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl895,428,800 - 95,502,606 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603945,182,262 - 45,258,685 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Snx31
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247637,455,924 - 7,515,155 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247637,455,924 - 7,515,120 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SNX31
3705 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system nervous system reproductive system respiratory system
High
Medium
Low 2 3 2 1 1
Below cutoff 6 3 1 15

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000006653   ⟹   ENSSSCP00000006474
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl436,303,284 - 36,388,952 (+)Ensembl
RefSeq Acc Id: XM_021089041   ⟹   XP_020944700
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1436,303,313 - 36,390,214 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021089042   ⟹   XP_020944701
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1436,303,313 - 36,390,214 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021089043   ⟹   XP_020944702
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1436,303,313 - 36,390,214 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_020944700   ⟸   XM_021089041
- Peptide Label: isoform X1
- UniProtKB: A0A4X1TT12 (UniProtKB/TrEMBL),   A0A8D0PYN8 (UniProtKB/TrEMBL),   A0A8D1YC66 (UniProtKB/TrEMBL),   F1S0Q5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020944701   ⟸   XM_021089042
- Peptide Label: isoform X2
- UniProtKB: A0A4X1TVS0 (UniProtKB/TrEMBL),   A0A8D0PYX5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020944702   ⟸   XM_021089043
- Peptide Label: isoform X3
- UniProtKB: A0A8D0V402 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000006474   ⟸   ENSSSCT00000006653
Protein Domains
PX


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000006064 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015073786 UniProtKB/TrEMBL
  ENSSSCG00025072313 UniProtKB/TrEMBL
  ENSSSCG00030000243 UniProtKB/TrEMBL
  ENSSSCG00035014823 UniProtKB/TrEMBL
  ENSSSCG00045030896 UniProtKB/TrEMBL
  ENSSSCG00055001904 UniProtKB/TrEMBL
  ENSSSCG00065033403 UniProtKB/TrEMBL
  ENSSSCG00070012091 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000006653 ENTREZGENE
  ENSSSCT00000006653.5 UniProtKB/TrEMBL
  ENSSSCT00015099470.1 UniProtKB/TrEMBL
  ENSSSCT00015099713.1 UniProtKB/TrEMBL
  ENSSSCT00025099571.1 UniProtKB/TrEMBL
  ENSSSCT00030000368.1 UniProtKB/TrEMBL
  ENSSSCT00035018835.1 UniProtKB/TrEMBL
  ENSSSCT00045052920.1 UniProtKB/TrEMBL
  ENSSSCT00055003545.1 UniProtKB/TrEMBL
  ENSSSCT00065045406.1 UniProtKB/TrEMBL
  ENSSSCT00070023586.1 UniProtKB/TrEMBL
  ENSSSCT00070023596.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.80.60 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/TrEMBL
  3.30.1520.10 UniProtKB/TrEMBL
InterPro PH-like_dom_sf UniProtKB/TrEMBL
  Phox UniProtKB/TrEMBL
  PX_dom_sf UniProtKB/TrEMBL
  SNX17-31_FERM_F1 UniProtKB/TrEMBL
  SNX17-31_FERM_F2 UniProtKB/TrEMBL
  SNX17/27/31 UniProtKB/TrEMBL
  SNX17/31_FERM UniProtKB/TrEMBL
NCBI Gene SNX31 ENTREZGENE
PANTHER PTHR12431 UniProtKB/TrEMBL
  SORTING NEXIN-31 UniProtKB/TrEMBL
Pfam PF00787 UniProtKB/TrEMBL
  SNX17-27-31_F1_FERM UniProtKB/TrEMBL
  SNX17-31_F2_FERM UniProtKB/TrEMBL
  SNX17_FERM_C UniProtKB/TrEMBL
PROSITE PS50195 UniProtKB/TrEMBL
SMART SM00312 UniProtKB/TrEMBL
Superfamily-SCOP SSF64268 UniProtKB/TrEMBL
UniProt A0A4X1TT12 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TVS0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0PYN8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0PYX5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0V402 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1YC66 ENTREZGENE, UniProtKB/TrEMBL
  F1S0Q5 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:93319 ENTREZGENE