NSG1 (neuronal vesicle trafficking associated 1) - Rat Genome Database

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Gene: NSG1 (neuronal vesicle trafficking associated 1) Sus scrofa
Analyze
Symbol: NSG1
Name: neuronal vesicle trafficking associated 1
RGD ID: 14143790
Description: ENCODES a protein that exhibits ionotropic glutamate receptor binding (ortholog); signaling receptor binding (ortholog); INVOLVED IN endosomal transport (ortholog); positive regulation of receptor recycling (ortholog); postsynaptic neurotransmitter receptor cycle (ortholog); ASSOCIATED WITH Ellis-Van Creveld syndrome (ortholog); FOUND IN dendrite (ortholog); early endosome (ortholog); early endosome membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: neuron-specific protein family member 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl86,000,057 - 6,024,769 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.186,000,054 - 6,023,379 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:15679890   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
NSG1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl86,000,057 - 6,024,769 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.186,000,054 - 6,023,379 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
NSG1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3844,386,532 - 4,419,058 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl44,348,140 - 4,419,058 (+)EnsemblGRCh38hg38GRCh38
GRCh3744,388,259 - 4,420,785 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3644,438,884 - 4,471,686 (+)NCBINCBI36Build 36hg18NCBI36
Build 3444,506,823 - 4,538,856NCBI
Celera44,285,777 - 4,318,783 (+)NCBICelera
Cytogenetic Map4p16.3NCBI
HuRef44,323,846 - 4,356,408 (+)NCBIHuRef
CHM1_144,385,947 - 4,418,741 (+)NCBICHM1_1
T2T-CHM13v2.044,350,456 - 4,388,523 (+)NCBIT2T-CHM13v2.0
Nsg1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39538,294,537 - 38,317,087 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl538,294,536 - 38,317,251 (-)EnsemblGRCm39 Ensembl
GRCm38538,137,193 - 38,159,743 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl538,137,192 - 38,159,907 (-)EnsemblGRCm38mm10GRCm38
MGSCv37538,528,432 - 38,550,706 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36538,425,442 - 38,447,716 (-)NCBIMGSCv36mm8
Celera535,587,097 - 35,609,344 (-)NCBICelera
Cytogenetic Map5B3NCBI
cM Map520.21NCBI
Nsg1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81476,861,079 - 76,882,822 (+)NCBIGRCr8
mRatBN7.21472,648,771 - 72,670,521 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1472,648,741 - 72,670,514 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1477,090,481 - 77,112,223 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01478,331,349 - 78,353,091 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01474,771,417 - 74,793,159 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01477,380,264 - 77,402,007 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1477,380,262 - 77,401,996 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01477,362,126 - 77,383,869 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41477,931,947 - 77,953,690 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11477,934,337 - 77,956,080 (+)NCBI
Celera1471,598,968 - 71,620,711 (+)NCBICelera
Cytogenetic Map14q21NCBI
Nsg1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555145,273,810 - 5,295,710 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555145,273,810 - 5,294,925 (-)NCBIChiLan1.0ChiLan1.0
NSG1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v234,652,831 - 4,683,301 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan144,585,813 - 4,616,317 (+)NCBINHGRI_mPanPan1
PanPan1.144,467,232 - 4,496,088 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl44,467,234 - 4,496,088 (+)Ensemblpanpan1.1panPan2
NSG1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1369,805,646 - 69,831,200 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl369,805,592 - 69,831,194 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha372,354,015 - 72,382,936 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0370,558,811 - 70,587,730 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1369,832,775 - 69,861,668 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0369,997,988 - 70,026,875 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0370,379,404 - 70,408,307 (+)NCBIUU_Cfam_GSD_1.0
Nsg1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528563,323,364 - 63,344,659 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647717,025,044 - 17,046,014 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647717,025,057 - 17,046,353 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NSG1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12740,544,037 - 40,576,479 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2740,544,701 - 40,579,108 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604787,345,154 - 87,377,591 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nsg1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475521,506,250 - 21,529,052 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475521,507,068 - 21,529,057 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in NSG1
659 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 3 23 1
Low 9 4 5 2 2 2 1
Below cutoff 1 2

Sequence


RefSeq Acc Id: ENSSSCT00000041778   ⟹   ENSSSCP00000043502
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl86,000,938 - 6,024,769 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000044341   ⟹   ENSSSCP00000054676
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl86,000,057 - 6,022,752 (-)Ensembl
RefSeq Acc Id: XM_021101008   ⟹   XP_020956667
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.186,000,054 - 6,023,379 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020956667   ⟸   XM_021101008
- UniProtKB: A0A4X1SIL5 (UniProtKB/TrEMBL),   I3LPI0 (UniProtKB/TrEMBL),   A0A8D0LW81 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000054676   ⟸   ENSSSCT00000044341
RefSeq Acc Id: ENSSSCP00000043502   ⟸   ENSSSCT00000041778


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000024892 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005038486 UniProtKB/TrEMBL
  ENSSSCG00025049032 UniProtKB/TrEMBL
  ENSSSCG00030021904 UniProtKB/TrEMBL
  ENSSSCG00035009333 UniProtKB/TrEMBL
  ENSSSCG00040040437 UniProtKB/TrEMBL
  ENSSSCG00045038666 UniProtKB/TrEMBL
  ENSSSCG00050057855 UniProtKB/TrEMBL
  ENSSSCG00055001110 UniProtKB/TrEMBL
  ENSSSCG00060023386 UniProtKB/TrEMBL
  ENSSSCG00070001069 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000041778 ENTREZGENE
  ENSSSCT00000041778.2 UniProtKB/TrEMBL
  ENSSSCT00000044341.2 UniProtKB/TrEMBL
  ENSSSCT00005061550.1 UniProtKB/TrEMBL
  ENSSSCT00025066959.1 UniProtKB/TrEMBL
  ENSSSCT00030030380.1 UniProtKB/TrEMBL
  ENSSSCT00030030388.1 UniProtKB/TrEMBL
  ENSSSCT00035011695.1 UniProtKB/TrEMBL
  ENSSSCT00035011700.1 UniProtKB/TrEMBL
  ENSSSCT00040054285.1 UniProtKB/TrEMBL
  ENSSSCT00045067114.1 UniProtKB/TrEMBL
  ENSSSCT00045067121.1 UniProtKB/TrEMBL
  ENSSSCT00050078917.1 UniProtKB/TrEMBL
  ENSSSCT00055001990.1 UniProtKB/TrEMBL
  ENSSSCT00055002000.1 UniProtKB/TrEMBL
  ENSSSCT00060031709.1 UniProtKB/TrEMBL
  ENSSSCT00070002015.1 UniProtKB/TrEMBL
  ENSSSCT00070002019.1 UniProtKB/TrEMBL
  ENSSSCT00070002029.1 UniProtKB/TrEMBL
InterPro NSG UniProtKB/TrEMBL
NCBI Gene NSG1 ENTREZGENE
PANTHER NEURONAL VESICLE TRAFFICKING-ASSOCIATED PROTEIN 1 UniProtKB/TrEMBL
  PTHR28546 UniProtKB/TrEMBL
Pfam Calcyon UniProtKB/TrEMBL
PIRSF Calcyon UniProtKB/TrEMBL
UniProt A0A287BEC2_PIG UniProtKB/TrEMBL
  A0A4X1SHJ6_PIG UniProtKB/TrEMBL
  A0A4X1SIL5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0LW81 ENTREZGENE, UniProtKB/TrEMBL
  I3LPI0 ENTREZGENE
UniProt Secondary I3LPI0 UniProtKB/TrEMBL
VGNC ID VGNC:90907 ENTREZGENE