USP9X (ubiquitin specific peptidase 9 X-linked) - Rat Genome Database

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Gene: USP9X (ubiquitin specific peptidase 9 X-linked) Sus scrofa
Analyze
Symbol: USP9X
Name: ubiquitin specific peptidase 9 X-linked
RGD ID: 14142873
Description: ENCODES a protein that exhibits cysteine-type endopeptidase activity (ortholog); ubiquitin protein ligase binding (ortholog); INVOLVED IN axon extension (ortholog); cellular response to transforming growth factor beta stimulus (ortholog); cerebellar cortex structural organization (ortholog); ASSOCIATED WITH autistic disorder (ortholog); body dysmorphic disorder (ortholog); Developmental Disabilities (ortholog); FOUND IN apical part of cell (ortholog); centrosome (ortholog); cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: probable ubiquitin carboxyl-terminal hydrolase FAF-X; ubiquitin specific protease 9, X-linked
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX36,760,865 - 36,885,250 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X36,736,049 - 36,888,702 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
apical part of cell  (ISO)
centrosome  (IEA,ISO)
cilium  (IEA)
cytoplasm  (IEA,ISO)
cytosol  (IBA,IEA)
growth cone  (IEA)
nucleus  (IBA)
postsynapse  (ISO)

References
Additional References at PubMed
PMID:12420137   PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202   PMID:35578792  


Genomics

Comparative Map Data
USP9X
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX36,760,865 - 36,885,250 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X36,736,049 - 36,888,702 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
USP9X
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X41,085,445 - 41,236,579 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX41,085,445 - 41,236,579 (+)EnsemblGRCh38hg38GRCh38
GRCh37X40,944,698 - 41,095,832 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X40,829,832 - 40,980,776 (+)NCBINCBI36Build 36hg18NCBI36
CeleraX45,085,646 - 45,236,596 (+)NCBICelera
Cytogenetic MapXp11.4NCBI
HuRefX38,676,295 - 38,826,441 (+)NCBIHuRef
CHM1_1X40,977,600 - 41,128,503 (+)NCBICHM1_1
T2T-CHM13v2.0X40,487,470 - 40,638,605 (+)NCBIT2T-CHM13v2.0
Usp9x
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X12,937,221 - 13,039,567 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX12,937,737 - 13,039,567 (+)EnsemblGRCm39 Ensembl
GRCm38X13,070,982 - 13,173,328 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX13,071,498 - 13,173,328 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X12,648,624 - 12,750,454 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X12,228,496 - 12,328,745 (+)NCBIMGSCv36mm8
CeleraX10,768,972 - 10,871,748 (+)NCBICelera
Cytogenetic MapXA1.1NCBI
cM MapX7.95NCBI
Usp9x
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X12,261,633 - 12,399,780 (-)NCBIGRCr8
mRatBN7.2X9,588,825 - 9,726,993 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX9,588,825 - 9,696,711 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX9,772,936 - 9,880,483 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X13,270,083 - 13,377,627 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X9,539,867 - 9,647,608 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X10,510,033 - 10,660,555 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX10,510,033 - 10,630,297 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X11,308,415 - 11,458,704 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X21,606,330 - 21,718,042 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX10,119,391 - 10,226,802 (-)NCBICelera
Cytogenetic MapXq12NCBI
Usp9x
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555651,479,040 - 1,602,070 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555651,479,040 - 1,602,070 (-)NCBIChiLan1.0ChiLan1.0
USP9X
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X42,734,028 - 42,881,834 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X42,737,410 - 42,887,035 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X33,535,543 - 33,683,220 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X41,231,814 - 41,380,569 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX41,232,041 - 41,379,910 (+)Ensemblpanpan1.1panPan2
USP9X
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X35,522,873 - 35,676,086 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX22,845,661 - 23,024,786 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X35,571,563 - 35,712,343 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1X35,624,905 - 35,803,984 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X35,597,545 - 35,776,521 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X35,640,469 - 35,819,595 (+)NCBIUU_Cfam_GSD_1.0
Usp9x
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X27,780,903 - 27,894,664 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365027,649,842 - 7,735,382 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365027,649,808 - 7,732,731 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
USP9X
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X38,255,414 - 38,402,855 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblY489,840 - 626,098 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
ChlSab1.1 EnsemblX38,256,008 - 38,403,323 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660763,448,010 - 3,595,885 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Usp9x
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476214,405,560 - 14,527,639 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476214,403,361 - 14,527,854 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in USP9X
1842 total Variants

Sequence


Ensembl Acc Id: ENSSSCT00000013397   ⟹   ENSSSCP00000013037
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX36,760,865 - 36,885,275 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000054956   ⟹   ENSSSCP00000045799
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX36,760,819 - 36,877,678 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000062541   ⟹   ENSSSCP00000041675
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX36,760,865 - 36,885,250 (+)Ensembl
RefSeq Acc Id: XM_021080147   ⟹   XP_020935806
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X36,760,865 - 36,888,702 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021080148   ⟹   XP_020935807
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X36,736,049 - 36,885,104 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021080149   ⟹   XP_020935808
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X36,763,275 - 36,885,104 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021080150   ⟹   XP_020935809
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X36,760,865 - 36,885,280 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021080151   ⟹   XP_020935810
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X36,760,865 - 36,885,279 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021080152   ⟹   XP_020935811
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X36,760,865 - 36,885,279 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020935807   ⟸   XM_021080148
- Peptide Label: isoform X1
- UniProtKB: A0A480JX05 (UniProtKB/TrEMBL),   A0A8D0I1P5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020935806   ⟸   XM_021080147
- Peptide Label: isoform X1
- UniProtKB: A0A480JX05 (UniProtKB/TrEMBL),   A0A8D0I1P5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020935809   ⟸   XM_021080150
- Peptide Label: isoform X2
- UniProtKB: A0A480HHX3 (UniProtKB/TrEMBL),   A0A8D1P641 (UniProtKB/TrEMBL),   A0A287ACW6 (UniProtKB/TrEMBL),   A0A287BAT2 (UniProtKB/TrEMBL),   A0A8D0I1P5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020935810   ⟸   XM_021080151
- Peptide Label: isoform X3
- UniProtKB: A0A480X9D5 (UniProtKB/TrEMBL),   A0A4X1SKQ9 (UniProtKB/TrEMBL),   A0A8D0I1P5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020935811   ⟸   XM_021080152
- Peptide Label: isoform X4
- UniProtKB: A0A8D1E284 (UniProtKB/TrEMBL),   A0A0B8RS61 (UniProtKB/TrEMBL),   A0A480KN98 (UniProtKB/TrEMBL),   A0A8D0I1P5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020935808   ⟸   XM_021080149
- Peptide Label: isoform X1
- UniProtKB: A0A480JX05 (UniProtKB/TrEMBL),   A0A8D0I1P5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000045799   ⟸   ENSSSCT00000054956
Ensembl Acc Id: ENSSSCP00000013037   ⟸   ENSSSCT00000013397
Ensembl Acc Id: ENSSSCP00000041675   ⟸   ENSSSCT00000062541
Protein Domains
USP


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000012251 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005005327 UniProtKB/TrEMBL
  ENSSSCG00015039301 UniProtKB/TrEMBL
  ENSSSCG00025067419 UniProtKB/TrEMBL
  ENSSSCG00030012028 UniProtKB/TrEMBL
  ENSSSCG00040026573 UniProtKB/TrEMBL
  ENSSSCG00045030637 UniProtKB/TrEMBL
  ENSSSCG00050041716 UniProtKB/TrEMBL
  ENSSSCG00055000973 UniProtKB/TrEMBL
  ENSSSCG00060071273 UniProtKB/TrEMBL
  ENSSSCG00065025523 UniProtKB/TrEMBL
  ENSSSCG00070001833 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000062541 ENTREZGENE
  ENSSSCT00000062541.3 UniProtKB/TrEMBL
  ENSSSCT00005008040.1 UniProtKB/TrEMBL
  ENSSSCT00005008649.1 UniProtKB/TrEMBL
  ENSSSCT00005008695.1 UniProtKB/TrEMBL
  ENSSSCT00005008842.1 UniProtKB/TrEMBL
  ENSSSCT00015052547.1 UniProtKB/TrEMBL
  ENSSSCT00015053089.1 UniProtKB/TrEMBL
  ENSSSCT00015053237.1 UniProtKB/TrEMBL
  ENSSSCT00015053953.1 UniProtKB/TrEMBL
  ENSSSCT00025092701.1 UniProtKB/TrEMBL
  ENSSSCT00025093423.1 UniProtKB/TrEMBL
  ENSSSCT00025094167.1 UniProtKB/TrEMBL
  ENSSSCT00030016545.1 UniProtKB/TrEMBL
  ENSSSCT00030016560.1 UniProtKB/TrEMBL
  ENSSSCT00030016566.1 UniProtKB/TrEMBL
  ENSSSCT00040036335.1 UniProtKB/TrEMBL
  ENSSSCT00040036665.1 UniProtKB/TrEMBL
  ENSSSCT00040036907.1 UniProtKB/TrEMBL
  ENSSSCT00045052353.1 UniProtKB/TrEMBL
  ENSSSCT00045052995.1 UniProtKB/TrEMBL
  ENSSSCT00045053479.1 UniProtKB/TrEMBL
  ENSSSCT00050056619.1 UniProtKB/TrEMBL
  ENSSSCT00050056625.1 UniProtKB/TrEMBL
  ENSSSCT00050056632.1 UniProtKB/TrEMBL
  ENSSSCT00055001760.1 UniProtKB/TrEMBL
  ENSSSCT00055001788.1 UniProtKB/TrEMBL
  ENSSSCT00055001822.1 UniProtKB/TrEMBL
  ENSSSCT00060097434.1 UniProtKB/TrEMBL
  ENSSSCT00060097527.1 UniProtKB/TrEMBL
  ENSSSCT00065034184.1 UniProtKB/TrEMBL
  ENSSSCT00065034198.1 UniProtKB/TrEMBL
  ENSSSCT00065034203.1 UniProtKB/TrEMBL
  ENSSSCT00070003653.1 UniProtKB/TrEMBL
  ENSSSCT00070003677.1 UniProtKB/TrEMBL
Gene3D-CATH Cysteine proteinases UniProtKB/TrEMBL
InterPro ARM-type_fold UniProtKB/TrEMBL
  DUF3517 UniProtKB/TrEMBL
  Papain-like_cys_pep_sf UniProtKB/TrEMBL
  Peptidase_C19 UniProtKB/TrEMBL
  Peptidase_C19_UCH UniProtKB/TrEMBL
  USP_CS UniProtKB/TrEMBL
  USP_dom UniProtKB/TrEMBL
NCBI Gene USP9X ENTREZGENE
PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE UniProtKB/TrEMBL
  UBIQUITINYL HYDROLASE 1 UniProtKB/TrEMBL
Pfam DUF3517 UniProtKB/TrEMBL
  UCH UniProtKB/TrEMBL
  UCH_UBL1 UniProtKB/TrEMBL
PROSITE USP_1 UniProtKB/TrEMBL
  USP_2 UniProtKB/TrEMBL
  USP_3 UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
  SSF54001 UniProtKB/TrEMBL
UniProt A0A0B8RS61 ENTREZGENE
  A0A287ACW6 ENTREZGENE, UniProtKB/TrEMBL
  A0A287BAT2 ENTREZGENE
  A0A480HHX3 ENTREZGENE
  A0A480JX05 ENTREZGENE, UniProtKB/TrEMBL
  A0A480KN98 ENTREZGENE, UniProtKB/TrEMBL
  A0A480X9D5 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SKQ9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0HW10_PIG UniProtKB/TrEMBL
  A0A8D0I1P5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0I1Z8_PIG UniProtKB/TrEMBL
  A0A8D0I7T1_PIG UniProtKB/TrEMBL
  A0A8D0NQ89_PIG UniProtKB/TrEMBL
  A0A8D0NSM3_PIG UniProtKB/TrEMBL
  A0A8D1DZP0_PIG UniProtKB/TrEMBL
  A0A8D1E284 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1ITC2_PIG UniProtKB/TrEMBL
  A0A8D1P641 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A287BAT2 UniProtKB/TrEMBL
  A0A480HHX3 UniProtKB/TrEMBL