HOXD11 (homeobox D11) - Rat Genome Database

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Gene: HOXD11 (homeobox D11) Sus scrofa
Analyze
Symbol: HOXD11
Name: homeobox D11
RGD ID: 14141829
Description: ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); sequence-specific double-stranded DNA binding (inferred); INVOLVED IN anterior/posterior pattern specification (ortholog); branching involved in ureteric bud morphogenesis (ortholog); cartilage development involved in endochondral bone morphogenesis (ortholog); ASSOCIATED WITH autistic disorder (ortholog); bone development disease (ortholog); Breast Neoplasms (ortholog); FOUND IN nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1581,908,460 - 81,911,282 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11581,906,654 - 81,910,765 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21591,374,469 - 91,377,543 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleoplasm  (IEA)
nucleus  (IBA,IEA)

References
Additional References at PubMed
PMID:14681463   PMID:17145712  


Genomics

Comparative Map Data
HOXD11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1581,908,460 - 81,911,282 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11581,906,654 - 81,910,765 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21591,374,469 - 91,377,543 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HOXD11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382176,107,280 - 176,115,679 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl2176,104,216 - 176,109,754 (+)EnsemblGRCh38hg38GRCh38
GRCh372176,972,008 - 176,974,482 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362176,680,330 - 176,682,562 (+)NCBINCBI36Build 36hg18NCBI36
Build 342176,797,590 - 176,799,823NCBI
Celera2170,581,234 - 170,583,461 (+)NCBICelera
Cytogenetic Map2q31.1NCBI
HuRef2168,849,568 - 168,851,540 (+)NCBIHuRef
CHM1_12176,977,935 - 176,980,184 (+)NCBICHM1_1
T2T-CHM13v2.02176,595,402 - 176,599,952 (+)NCBIT2T-CHM13v2.0
Hoxd11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39274,509,902 - 74,517,360 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl274,509,901 - 74,517,360 (+)EnsemblGRCm39 Ensembl
GRCm38274,679,558 - 74,687,016 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl274,679,557 - 74,687,016 (+)EnsemblGRCm38mm10GRCm38
MGSCv37274,520,450 - 74,522,195 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36274,483,232 - 74,484,977 (+)NCBIMGSCv36mm8
Celera276,352,501 - 76,354,246 (+)NCBICelera
Cytogenetic Map2C3NCBI
cM Map244.13NCBI
Hoxd11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2359,584,840 - 59,587,257 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl359,585,039 - 59,586,783 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0361,604,256 - 61,606,874 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl361,604,672 - 61,606,400 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0368,071,282 - 68,076,686 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera359,104,507 - 59,109,071 (+)NCBICelera
Cytogenetic Map3q23NCBI
Hoxd11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540320,541,870 - 20,556,574 (-)NCBIChiLan1.0ChiLan1.0
HOXD11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan12B78,789,873 - 78,791,788 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B63,386,806 - 63,398,777 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B181,095,347 - 181,098,680 (+)NCBIpanpan1.1PanPan1.1panPan2
HOXD11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13619,913,064 - 19,926,868 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3619,914,431 - 19,916,766 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3619,921,364 - 19,929,032 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03620,052,553 - 20,060,228 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.13620,129,998 - 20,134,442 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03620,130,689 - 20,135,144 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03620,239,278 - 20,246,796 (+)NCBIUU_Cfam_GSD_1.0
HOXD11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11061,681,474 - 61,693,974 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1061,682,400 - 61,684,168 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040137,925,780 - 137,928,157 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system musculoskeletal system renal system reproductive system
High
Medium
Low 3 1 2 2
Below cutoff 1 1 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000052008   ⟹   ENSSSCP00000053700
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1581,908,460 - 81,911,282 (+)Ensembl
RefSeq Acc Id: XM_021076347   ⟹   XP_020932006
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11581,906,654 - 81,910,765 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020932006 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_020932006   ⟸   XM_021076347
- Sequence:
RefSeq Acc Id: ENSSSCP00000053700   ⟸   ENSSSCT00000052008
Protein Domains
Homeobox


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000034741 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000053700.2 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000052008.3 UniProtKB/TrEMBL
Gene3D-CATH Homeodomain-like UniProtKB/TrEMBL
InterPro DUF3528 UniProtKB/TrEMBL
  Homeobox-like_sf UniProtKB/TrEMBL
  Homeobox_CS UniProtKB/TrEMBL
  Homeobox_dom UniProtKB/TrEMBL
  Homeobox_metazoa UniProtKB/TrEMBL
NCBI Gene HOXD11 ENTREZGENE
PANTHER HOMEOBOX PROTEIN HOX-A11-RELATED UniProtKB/TrEMBL
  HOMEOBOX PROTEIN HOX-D11 UniProtKB/TrEMBL
Pfam DUF3528 UniProtKB/TrEMBL
  Homeodomain UniProtKB/TrEMBL
PRINTS HOMEOBOX UniProtKB/TrEMBL
PROSITE HOMEOBOX_1 UniProtKB/TrEMBL
  HOMEOBOX_2 UniProtKB/TrEMBL
SMART HOX UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/TrEMBL
UniProt A0A287BBI6_PIG UniProtKB/TrEMBL
VGNC ID VGNC:96352 ENTREZGENE