CYP20A1 (cytochrome P450 family 20 subfamily A member 1) - Rat Genome Database

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Gene: CYP20A1 (cytochrome P450 family 20 subfamily A member 1) Sus scrofa
Analyze
Symbol: CYP20A1
Name: cytochrome P450 family 20 subfamily A member 1
RGD ID: 14141159
Description: ENCODES a protein that exhibits heme binding (inferred); iron ion binding (inferred); monooxygenase activity (inferred); INVOLVED IN protein localization (inferred); ASSOCIATED WITH autoimmune lymphoproliferative syndrome type 2B (ortholog); Autoimmune Lymphoproliferative Syndrome, Type V (ortholog); common variable immunodeficiency 1 (ortholog); FOUND IN cytosol (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: cytochrome P450 20A1; cytochrome P450, family 20, subfamily A, polypeptide 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15106,696,717 - 106,765,131 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115106,696,722 - 106,763,126 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IBA,IEA)
membrane  (IBA,IEA)

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CYP20A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15106,696,717 - 106,765,131 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115106,696,722 - 106,763,126 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CYP20A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382203,239,018 - 203,306,026 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2203,238,977 - 203,306,026 (+)EnsemblGRCh38hg38GRCh38
GRCh372204,103,741 - 204,170,749 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362203,811,409 - 203,878,808 (+)NCBINCBI36Build 36hg18NCBI36
Celera2197,856,120 - 197,924,954 (+)NCBICelera
Cytogenetic Map2q33.2NCBI
HuRef2195,951,328 - 196,018,059 (+)NCBIHuRef
CHM1_12204,109,760 - 204,177,160 (+)NCBICHM1_1
T2T-CHM13v2.02203,720,529 - 203,787,984 (+)NCBIT2T-CHM13v2.0
Cyp20a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39160,382,459 - 60,427,219 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl160,382,482 - 60,427,219 (+)EnsemblGRCm39 Ensembl
GRCm38160,343,300 - 60,388,060 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl160,343,323 - 60,388,060 (+)EnsemblGRCm38mm10GRCm38
MGSCv37160,400,216 - 60,444,231 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36160,287,918 - 60,331,933 (+)NCBIMGSCv36mm8
Celera160,859,068 - 60,903,156 (+)NCBICelera
Cytogenetic Map1C2NCBI
cM Map130.47NCBI
Cyp20a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8969,249,841 - 69,299,146 (+)NCBIGRCr8
mRatBN7.2961,755,804 - 61,805,123 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl961,755,790 - 61,805,123 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx970,257,758 - 70,307,021 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0975,373,325 - 75,422,592 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0973,692,027 - 73,741,293 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0967,130,222 - 67,179,693 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl967,130,259 - 67,179,692 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0966,943,519 - 66,993,518 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4958,907,503 - 58,973,287 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1959,054,484 - 59,120,268 (+)NCBI
Celera959,185,997 - 59,234,590 (+)NCBICelera
Cytogenetic Map9q32NCBI
LOC102029370
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545711,584,584 - 11,647,153 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545711,585,851 - 11,646,764 (-)NCBIChiLan1.0ChiLan1.0
CYP20A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213105,844,450 - 105,911,839 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B105,858,543 - 105,926,607 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B90,473,024 - 90,539,177 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B208,615,273 - 208,672,731 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B208,615,273 - 208,672,731 (+)Ensemblpanpan1.1panPan2
CYP20A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13712,085,566 - 12,141,061 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3712,086,749 - 12,140,228 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3712,967,700 - 13,025,439 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03712,021,984 - 12,079,777 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3712,022,000 - 12,079,780 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13711,977,955 - 12,035,702 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03711,949,094 - 12,006,838 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03711,943,390 - 12,001,145 (+)NCBIUU_Cfam_GSD_1.0
LOC101964504
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303160,264,790 - 160,325,537 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367262,235,361 - 2,298,775 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367262,234,611 - 2,295,527 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CYP20A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11088,986,394 - 89,051,344 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1088,987,016 - 89,042,537 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040110,330,792 - 110,397,954 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
LOC101700295
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476513,105,816 - 13,159,574 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476513,108,937 - 13,159,580 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CYP20A1
864 total Variants

Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000017549   ⟹   ENSSSCP00000017077
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl15106,517,304 - 106,680,337 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000038809   ⟹   ENSSSCP00000034118
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl15106,517,304 - 106,680,337 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000045406   ⟹   ENSSSCP00000055237
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl15106,517,304 - 106,680,337 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000054292   ⟹   ENSSSCP00000043876
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl15106,697,072 - 106,765,131 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000059664   ⟹   ENSSSCP00000049019
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl15106,696,717 - 106,765,131 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000068236   ⟹   ENSSSCP00000060381
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl15106,516,038 - 106,559,974 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000075790   ⟹   ENSSSCP00000067106
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl15106,530,117 - 106,559,974 (+)Ensembl
RefSeq Acc Id: NM_001315809   ⟹   NP_001302738
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.115106,696,722 - 106,763,126 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001302738   ⟸   NM_001315809
- UniProtKB: A0A0H4IRA9 (UniProtKB/TrEMBL),   A0A480XG12 (UniProtKB/TrEMBL),   A0A4X1V508 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000043876   ⟸   ENSSSCT00000054292
RefSeq Acc Id: ENSSSCP00000060381   ⟸   ENSSSCT00000068236
RefSeq Acc Id: ENSSSCP00000067106   ⟸   ENSSSCT00000075790
RefSeq Acc Id: ENSSSCP00000049019   ⟸   ENSSSCT00000059664
RefSeq Acc Id: ENSSSCP00000055237   ⟸   ENSSSCT00000045406
RefSeq Acc Id: ENSSSCP00000017077   ⟸   ENSSSCT00000017549
RefSeq Acc Id: ENSSSCP00000034118   ⟸   ENSSSCT00000038809
Protein Domains
BEACH   BEACH-type PH


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000016118 Ensembl, UniProtKB/TrEMBL
  ENSSSCG00000055761 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070021805 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000017549.5 UniProtKB/TrEMBL
  ENSSSCT00000038809.3 UniProtKB/TrEMBL
  ENSSSCT00000045406.3 UniProtKB/TrEMBL
  ENSSSCT00000054292.3 UniProtKB/TrEMBL
  ENSSSCT00000059664 ENTREZGENE
  ENSSSCT00000059664.3 UniProtKB/TrEMBL
  ENSSSCT00070043320.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1540.10 UniProtKB/TrEMBL
  1.10.630.10 UniProtKB/TrEMBL
  2.130.10.10 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/TrEMBL
  2.60.120.200 UniProtKB/TrEMBL
InterPro ARM-type_fold UniProtKB/TrEMBL
  BEACH_dom UniProtKB/TrEMBL
  BEACH_dom_sf UniProtKB/TrEMBL
  ConA-like_dom_sf UniProtKB/TrEMBL
  Cyt_P450 UniProtKB/TrEMBL
  Cyt_P450_E_grp-I UniProtKB/TrEMBL
  Cyt_P450_sf UniProtKB/TrEMBL
  NBCH_WD40 UniProtKB/TrEMBL
  NBEA/BDCP_DUF4704 UniProtKB/TrEMBL
  PH-BEACH_dom UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
KEGG Report ssc:100124408 UniProtKB/TrEMBL
NCBI Gene CYP20A1 ENTREZGENE
PANTHER BEIGE/BEACH-RELATED UniProtKB/TrEMBL
  CYTOCHROME P450 20A1 UniProtKB/TrEMBL
  CYTOCHROME P450 20A1 UniProtKB/TrEMBL
  NEUROBEACHIN-LIKE PROTEIN 1 UniProtKB/TrEMBL
Pfam Beach UniProtKB/TrEMBL
  DUF4704 UniProtKB/TrEMBL
  DUF4800 UniProtKB/TrEMBL
  NBCH_WD40 UniProtKB/TrEMBL
  p450 UniProtKB/TrEMBL
  PH_BEACH UniProtKB/TrEMBL
PRINTS EP450I UniProtKB/TrEMBL
PROSITE BEACH UniProtKB/TrEMBL
  PH_BEACH UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/TrEMBL
SMART Beach UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
  SSF48264 UniProtKB/TrEMBL
  SSF48371 UniProtKB/TrEMBL
  SSF49899 UniProtKB/TrEMBL
  SSF50978 UniProtKB/TrEMBL
  SSF81837 UniProtKB/TrEMBL
UniProt A0A0H4IRA9 ENTREZGENE, UniProtKB/TrEMBL
  A0A286ZRL3_PIG UniProtKB/TrEMBL
  A0A287AJ02_PIG UniProtKB/TrEMBL
  A0A287AY02_PIG UniProtKB/TrEMBL
  A0A287BFX1_PIG UniProtKB/TrEMBL
  A0A480XG12 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1V508 ENTREZGENE, UniProtKB/TrEMBL
  A7KZR4_PIG UniProtKB/TrEMBL
  F1SHE6_PIG UniProtKB/TrEMBL
VGNC ID VGNC:103366 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-12-21 CYP20A1  cytochrome P450 family 20 subfamily A member 1  CYP20A1  cytochrome P450, family 20, subfamily A, polypeptide 1  Symbol and/or name change 19259463 PROVISIONAL