TACR2 (tachykinin receptor 2) - Rat Genome Database

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Gene: TACR2 (tachykinin receptor 2) Sus scrofa
Analyze
Symbol: TACR2
Name: tachykinin receptor 2
RGD ID: 14140825
Description: ENCODES a protein that exhibits substance K receptor activity (ortholog); INVOLVED IN intestine smooth muscle contraction (ortholog); negative regulation of luteinizing hormone secretion (ortholog); operant conditioning (ortholog); ASSOCIATED WITH Abnormal Reflexes (ortholog); asthma (ortholog); bronchial disease (ortholog); FOUND IN plasma membrane (inferred); sperm flagellum (inferred); sperm head (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: substance-K receptor
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1472,462,046 - 72,475,554 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11472,463,405 - 72,476,034 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21478,472,145 - 78,484,779 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TACR2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1472,462,046 - 72,475,554 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11472,463,405 - 72,476,034 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21478,472,145 - 78,484,779 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TACR2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381069,403,903 - 69,416,918 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1069,403,903 - 69,416,918 (-)EnsemblGRCh38hg38GRCh38
GRCh371071,163,659 - 71,176,674 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361070,833,964 - 70,846,680 (-)NCBINCBI36Build 36hg18NCBI36
Build 341070,834,587 - 70,846,085NCBI
Celera1064,440,372 - 64,453,089 (-)NCBICelera
Cytogenetic Map10q22.1NCBI
HuRef1065,163,875 - 65,176,488 (-)NCBIHuRef
CHM1_11071,445,702 - 71,458,328 (-)NCBICHM1_1
T2T-CHM13v2.01070,271,946 - 70,284,965 (-)NCBIT2T-CHM13v2.0
Tacr2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391062,088,217 - 62,101,769 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1062,088,217 - 62,101,769 (+)EnsemblGRCm39 Ensembl
GRCm381062,252,438 - 62,265,990 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1062,252,438 - 62,265,990 (+)EnsemblGRCm38mm10GRCm38
MGSCv371061,715,186 - 61,728,738 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361061,648,113 - 61,661,347 (+)NCBIMGSCv36mm8
Celera1063,355,717 - 63,369,239 (+)NCBICelera
Cytogenetic Map10B4NCBI
cM Map1032.37NCBI
Tacr2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82030,751,645 - 30,766,181 (+)NCBIGRCr8
mRatBN7.22030,208,907 - 30,223,446 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2030,208,907 - 30,223,446 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2031,219,840 - 31,234,379 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02030,610,743 - 30,625,283 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02031,347,369 - 31,361,936 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02031,892,515 - 31,905,153 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2031,892,515 - 31,905,153 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02033,683,625 - 33,697,583 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera2031,631,222 - 31,645,611 (+)NCBICelera
Cytogenetic Map20q11NCBI
Tacr2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543721,719,246 - 21,731,963 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543721,719,246 - 21,731,963 (+)NCBIChiLan1.0ChiLan1.0
TACR2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2881,552,259 - 81,564,930 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11081,555,052 - 81,570,251 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01065,872,795 - 65,885,154 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11068,403,637 - 68,415,819 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1068,403,979 - 68,415,224 (-)Ensemblpanpan1.1panPan2
TACR2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1420,518,797 - 20,531,118 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl420,517,563 - 20,531,867 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha420,648,836 - 20,661,157 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0420,789,440 - 20,803,600 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl420,789,441 - 20,803,805 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1420,690,847 - 20,703,141 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0420,894,732 - 20,907,028 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0421,238,092 - 21,250,413 (-)NCBIUU_Cfam_GSD_1.0
Tacr2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721360,560,454 - 60,573,628 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365219,053,179 - 9,065,797 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365219,053,179 - 9,065,790 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TACR2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1961,902,565 - 61,915,402 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl961,903,477 - 61,914,558 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604822,643,039 - 22,655,064 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tacr2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247543,656,319 - 3,670,432 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247543,658,128 - 3,670,432 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TACR2
415 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 9 2 3 3 15 2 1
Below cutoff 1 2 2 1 7 2 1 2

Sequence


RefSeq Acc Id: ENSSSCT00000011224   ⟹   ENSSSCP00000010932
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1472,462,046 - 72,475,554 (-)Ensembl
RefSeq Acc Id: XM_001929073   ⟹   XP_001929108
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11472,463,405 - 72,476,034 (-)NCBI
Sequence:
RefSeq Acc Id: XP_001929108   ⟸   XM_001929073
- UniProtKB: A0A4X1TFX5 (UniProtKB/TrEMBL),   A0A8D0V2Z1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000010932   ⟸   ENSSSCT00000011224

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000010254 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005014830 UniProtKB/TrEMBL
  ENSSSCG00015025094 UniProtKB/TrEMBL
  ENSSSCG00025077468 UniProtKB/TrEMBL
  ENSSSCG00030025650 UniProtKB/TrEMBL
  ENSSSCG00035013826 UniProtKB/TrEMBL
  ENSSSCG00040018406 UniProtKB/TrEMBL
  ENSSSCG00045025894 UniProtKB/TrEMBL
  ENSSSCG00050023287 UniProtKB/TrEMBL
  ENSSSCG00055029236 UniProtKB/TrEMBL
  ENSSSCG00060013780 UniProtKB/TrEMBL
  ENSSSCG00065065199 UniProtKB/TrEMBL
  ENSSSCG00070009587 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000011224 ENTREZGENE
  ENSSSCT00000011224.4 UniProtKB/TrEMBL
  ENSSSCT00005023206.1 UniProtKB/TrEMBL
  ENSSSCT00015033327.1 UniProtKB/TrEMBL
  ENSSSCT00015033372.1 UniProtKB/TrEMBL
  ENSSSCT00025107706.1 UniProtKB/TrEMBL
  ENSSSCT00030035815.1 UniProtKB/TrEMBL
  ENSSSCT00035017469.1 UniProtKB/TrEMBL
  ENSSSCT00040024872.1 UniProtKB/TrEMBL
  ENSSSCT00045044100.1 UniProtKB/TrEMBL
  ENSSSCT00050031431.1 UniProtKB/TrEMBL
  ENSSSCT00055058032.1 UniProtKB/TrEMBL
  ENSSSCT00060018171.1 UniProtKB/TrEMBL
  ENSSSCT00065089486.1 UniProtKB/TrEMBL
  ENSSSCT00070018576.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Neurokn_rcpt UniProtKB/TrEMBL
  NK2_rcpt UniProtKB/TrEMBL
KEGG Report ssc:100151877 UniProtKB/TrEMBL
NCBI Gene TACR2 ENTREZGENE
PANTHER G-PROTEIN COUPLED RECEPTOR TKR-1-RELATED UniProtKB/TrEMBL
  PTHR46925:SF3 UniProtKB/TrEMBL
Pfam 7tm_1 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  NEUROKININ2R UniProtKB/TrEMBL
  NEUROKININR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
SMART 7TM_GPCR_Srsx UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A4X1TFX5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0V2Z1 ENTREZGENE, UniProtKB/TrEMBL
  F1SUF1_PIG UniProtKB/TrEMBL
VGNC ID VGNC:93702 ENTREZGENE