GRK1 (G protein-coupled receptor kinase 1) - Rat Genome Database

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Gene: GRK1 (G protein-coupled receptor kinase 1) Sus scrofa
Analyze
Symbol: GRK1
Name: G protein-coupled receptor kinase 1
RGD ID: 14140673
Description: ENCODES a protein that exhibits rhodopsin kinase activity (ortholog); INVOLVED IN apoptotic process (ortholog); negative regulation of neuron apoptotic process (ortholog); photoreceptor cell morphogenesis (ortholog); PARTICIPATES IN visual phototransduction pathway; ASSOCIATED WITH congenital stationary night blindness (ortholog); congestive heart failure (ortholog); Experimental Diabetes Mellitus (ortholog); FOUND IN photoreceptor outer segment (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: rhodopsin kinase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1178,793,777 - 78,804,262 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11178,793,670 - 78,803,291 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21186,527,109 - 86,537,944 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
GRK1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1178,793,777 - 78,804,262 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11178,793,670 - 78,803,291 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21186,527,109 - 86,537,944 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GRK1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3813113,648,199 - 113,737,736 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl13113,667,219 - 113,737,736 (+)EnsemblGRCh38hg38GRCh38
GRCh3713114,321,534 - 114,440,709 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3613113,369,595 - 113,373,975 (+)NCBINCBI36Build 36hg18NCBI36
Build 3413113,369,597 - 113,373,973NCBI
Celera1395,148,890 - 95,166,521 (+)NCBICelera
Cytogenetic Map13q34NCBI
HuRef1394,993,393 - 94,997,833 (-)NCBIHuRef
HuRef1394,760,843 - 94,763,381 (+)NCBIHuRef
CHM1_113114,395,320 - 114,407,284 (+)NCBICHM1_1
CHM1_113114,290,923 - 114,295,255 (+)NCBICHM1_1
T2T-CHM13v2.013112,903,498 - 112,947,029 (+)NCBIT2T-CHM13v2.0
Grk1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39813,455,081 - 13,471,951 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl813,455,081 - 13,471,951 (+)EnsemblGRCm39 Ensembl
GRCm38813,405,081 - 13,421,951 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl813,405,081 - 13,421,951 (+)EnsemblGRCm38mm10GRCm38
MGSCv37813,405,081 - 13,421,951 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36813,405,058 - 13,417,557 (+)NCBIMGSCv36mm8
Celera813,573,519 - 13,590,102 (+)NCBICelera
Cytogenetic Map8A1.1NCBI
cM Map85.93NCBI
Grk1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81682,821,184 - 82,837,971 (-)NCBIGRCr8
mRatBN7.21676,122,501 - 76,135,792 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1676,123,842 - 76,135,792 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1681,404,428 - 81,416,381 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01684,857,390 - 84,869,343 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01680,106,227 - 80,118,183 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01681,153,489 - 81,165,442 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1681,153,489 - 81,165,442 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01680,641,991 - 80,657,693 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41680,979,323 - 80,991,796 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11680,979,589 - 80,992,061 (-)NCBI
Celera1673,931,302 - 73,943,259 (-)NCBICelera
Cytogenetic Map16q12.5NCBI
Grk1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955404343,009 - 353,683 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955404343,009 - 353,683 (-)NCBIChiLan1.0ChiLan1.0
GRK1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v214115,179,766 - 115,204,613 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan113113,871,114 - 113,897,632 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01394,816,045 - 94,838,509 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.113113,867,002 - 113,885,610 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl13113,867,002 - 113,885,610 (+)Ensemblpanpan1.1panPan2
GRK1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12260,911,953 - 60,929,330 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2260,911,953 - 60,926,146 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2260,622,827 - 60,638,762 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02261,596,581 - 61,612,683 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2261,596,581 - 61,609,597 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12261,035,074 - 61,051,125 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02261,037,157 - 61,053,062 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02261,068,208 - 61,084,263 (+)NCBIUU_Cfam_GSD_1.0
Grk1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945195,787,031 - 195,800,023 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936472151,854 - 165,281 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936472152,202 - 165,134 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GRK1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1391,633,902 - 91,655,989 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl391,636,813 - 91,653,521 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604648,723,661 - 48,741,396 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Grk1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624793453,125 - 462,053 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624793453,125 - 462,053 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in GRK1
236 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system nervous system
High
Medium
Low
Below cutoff 3 1

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003357908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSSSCT00000010483   ⟹   ENSSSCP00000010211
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1178,793,777 - 78,804,262 (+)Ensembl
RefSeq Acc Id: XM_003357908   ⟹   XP_003357956
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11178,793,670 - 78,803,291 (+)NCBI
Sequence:
RefSeq Acc Id: XP_003357956   ⟸   XM_003357908
- UniProtKB: F1RN35 (UniProtKB/TrEMBL),   A0A4X1U1R4 (UniProtKB/TrEMBL),   A0A8D1DSD1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000010211   ⟸   ENSSSCT00000010483
Protein Domains
AGC-kinase C-terminal   Protein kinase   RGS


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000009562 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015004882 UniProtKB/TrEMBL
  ENSSSCG00025027489 UniProtKB/TrEMBL
  ENSSSCG00030008218 UniProtKB/TrEMBL
  ENSSSCG00035033002 UniProtKB/TrEMBL
  ENSSSCG00040019282 UniProtKB/TrEMBL
  ENSSSCG00045034276 UniProtKB/TrEMBL
  ENSSSCG00050036725 UniProtKB/TrEMBL
  ENSSSCG00055029178 UniProtKB/TrEMBL
  ENSSSCG00060039023 UniProtKB/TrEMBL
  ENSSSCG00065078427 UniProtKB/TrEMBL
  ENSSSCG00070013495 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000010483 ENTREZGENE
  ENSSSCT00000010483.4 UniProtKB/TrEMBL
  ENSSSCT00015006568.1 UniProtKB/TrEMBL
  ENSSSCT00025037272.1 UniProtKB/TrEMBL
  ENSSSCT00030011169.1 UniProtKB/TrEMBL
  ENSSSCT00035043732.1 UniProtKB/TrEMBL
  ENSSSCT00040026072.1 UniProtKB/TrEMBL
  ENSSSCT00045058710.1 UniProtKB/TrEMBL
  ENSSSCT00050049416.1 UniProtKB/TrEMBL
  ENSSSCT00055057958.1 UniProtKB/TrEMBL
  ENSSSCT00060052766.1 UniProtKB/TrEMBL
  ENSSSCT00065108688.1 UniProtKB/TrEMBL
  ENSSSCT00070026318.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.167.10 UniProtKB/TrEMBL
  Transferase(Phosphotransferase) domain 1 UniProtKB/TrEMBL
InterPro AGC-kinase_C UniProtKB/TrEMBL
  GPCR_kinase UniProtKB/TrEMBL
  GRK1_dom UniProtKB/TrEMBL
  Kinase-like_dom_sf UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/TrEMBL
  RGS UniProtKB/TrEMBL
  RGS_sf UniProtKB/TrEMBL
  RGS_subdomain_2 UniProtKB/TrEMBL
  Ser/Thr_kinase_AS UniProtKB/TrEMBL
KEGG Report ssc:100620646 UniProtKB/TrEMBL
NCBI Gene GRK1 ENTREZGENE
PANTHER G PROTEIN-COUPLED RECEPTOR KINASE/RIBOSOMAL PROTEIN S6 KINASE UniProtKB/TrEMBL
  PTHR24355:SF11 UniProtKB/TrEMBL
Pfam Pkinase UniProtKB/TrEMBL
  RGS UniProtKB/TrEMBL
PRINTS GPCRKINASE UniProtKB/TrEMBL
PROSITE AGC_KINASE_CTER UniProtKB/TrEMBL
  PROTEIN_KINASE_ATP UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/TrEMBL
  PROTEIN_KINASE_ST UniProtKB/TrEMBL
  RGS UniProtKB/TrEMBL
SMART RGS UniProtKB/TrEMBL
  S_TK_X UniProtKB/TrEMBL
  S_TKc UniProtKB/TrEMBL
Superfamily-SCOP SSF48097 UniProtKB/TrEMBL
  SSF56112 UniProtKB/TrEMBL
UniProt A0A4X1U1R4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1DSD1 ENTREZGENE, UniProtKB/TrEMBL
  F1RN35 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:88693 ENTREZGENE