RAB6B (RAB6B, member RAS oncogene family) - Rat Genome Database

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Gene: RAB6B (RAB6B, member RAS oncogene family) Sus scrofa
Analyze
Symbol: RAB6B
Name: RAB6B, member RAS oncogene family (Ensembl:RAB6B, member RAS onco family)
RGD ID: 14140331
Description: ENCODES a protein that exhibits GTP binding (inferred); GTPase activity (inferred); myosin V binding (inferred); INVOLVED IN Golgi organization (inferred); protein localization to Golgi membrane (inferred); ASSOCIATED WITH Primary Lymphedema with Myelodysplasia (ortholog); FOUND IN presynapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ras-related protein Rab-6B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1375,012,268 - 75,075,239 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11375,012,267 - 75,075,324 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21382,510,690 - 82,573,714 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
RAB6B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1375,012,268 - 75,075,239 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11375,012,267 - 75,075,324 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21382,510,690 - 82,573,714 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RAB6B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383133,824,235 - 133,895,882 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3133,824,235 - 133,895,882 (-)EnsemblGRCh38hg38GRCh38
GRCh373133,543,079 - 133,614,726 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363135,025,769 - 135,097,381 (-)NCBINCBI36Build 36hg18NCBI36
Build 343135,025,784 - 135,097,137NCBI
Celera3131,968,881 - 132,040,477 (-)NCBICelera
Cytogenetic Map3q22.1NCBI
HuRef3130,921,268 - 130,992,822 (-)NCBIHuRef
CHM1_13133,507,024 - 133,578,520 (-)NCBICHM1_1
T2T-CHM13v2.03136,569,430 - 136,641,051 (-)NCBIT2T-CHM13v2.0
Rab6b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399102,988,866 - 103,062,475 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9102,988,986 - 103,062,475 (+)EnsemblGRCm39 Ensembl
GRCm389103,111,667 - 103,185,276 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9103,111,787 - 103,185,276 (+)EnsemblGRCm38mm10GRCm38
MGSCv379103,014,404 - 103,087,600 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369102,970,224 - 103,043,420 (+)NCBIMGSCv36mm8
Celera9102,662,484 - 102,735,933 (+)NCBICelera
Cytogenetic Map9F1NCBI
cM Map954.88NCBI
Rab6b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88112,574,223 - 112,642,911 (+)NCBIGRCr8
mRatBN7.28103,695,328 - 103,764,023 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8103,695,631 - 103,805,732 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8109,354,470 - 109,423,481 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08107,553,634 - 107,622,649 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08105,396,318 - 105,465,325 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08111,600,375 - 111,668,817 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8111,600,532 - 111,668,808 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08110,991,008 - 111,059,794 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48108,151,061 - 108,192,013 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18108,124,726 - 108,209,832 (+)NCBI
Celera8103,101,314 - 103,142,215 (+)NCBICelera
Cytogenetic Map8q32NCBI
Rab6b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555014,732,616 - 4,781,094 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555014,751,647 - 4,781,094 (+)NCBIChiLan1.0ChiLan1.0
RAB6B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22131,748,402 - 131,820,183 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13131,753,131 - 131,824,912 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03130,869,494 - 130,941,280 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13138,344,807 - 138,416,358 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3138,344,815 - 138,416,358 (-)Ensemblpanpan1.1panPan2
RAB6B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12330,714,723 - 30,754,765 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2330,717,062 - 30,749,188 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2330,693,860 - 30,754,169 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02331,235,166 - 31,295,933 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2331,235,171 - 31,295,965 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12330,931,304 - 30,989,279 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02330,986,735 - 31,047,041 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02331,234,354 - 31,294,724 (-)NCBIUU_Cfam_GSD_1.0
Rab6b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560270,209,010 - 70,271,228 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365296,969,284 - 7,031,918 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365296,969,507 - 7,031,733 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAB6B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11556,472,615 - 56,541,083 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1556,472,634 - 56,541,434 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604129,455,217 - 29,523,670 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rab6b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473010,133,949 - 10,197,551 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473010,134,215 - 10,197,534 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RAB6B
1490 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 3 23 3 5 13 11 23 3 5 1

Sequence


Ensembl Acc Id: ENSSSCT00000041891   ⟹   ENSSSCP00000057141
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1375,012,268 - 75,075,195 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000067458   ⟹   ENSSSCP00000059849
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1375,014,524 - 75,075,274 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000070320   ⟹   ENSSSCP00000064255
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1375,012,272 - 75,075,239 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000076830   ⟹   ENSSSCP00000064478
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1375,012,268 - 75,045,694 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000083510   ⟹   ENSSSCP00000063937
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1375,012,268 - 75,065,129 (-)Ensembl
RefSeq Acc Id: XM_003132428   ⟹   XP_003132476
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11375,012,267 - 75,075,324 (-)NCBI
Sequence:
RefSeq Acc Id: XP_003132476   ⟸   XM_003132428
- UniProtKB: A0A8D0YQ49 (UniProtKB/TrEMBL),   A0A8D1FZZ8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000063937   ⟸   ENSSSCT00000083510
Ensembl Acc Id: ENSSSCP00000057141   ⟸   ENSSSCT00000041891
Ensembl Acc Id: ENSSSCP00000064255   ⟸   ENSSSCT00000070320
Ensembl Acc Id: ENSSSCP00000064478   ⟸   ENSSSCT00000076830
Ensembl Acc Id: ENSSSCP00000059849   ⟸   ENSSSCT00000067458


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000036503 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005044912 UniProtKB/TrEMBL
  ENSSSCG00015073875 UniProtKB/TrEMBL
  ENSSSCG00025059871 UniProtKB/TrEMBL
  ENSSSCG00030040683 UniProtKB/TrEMBL
  ENSSSCG00035010088 UniProtKB/TrEMBL
  ENSSSCG00040071975 UniProtKB/TrEMBL
  ENSSSCG00045000124 UniProtKB/TrEMBL
  ENSSSCG00050023207 UniProtKB/TrEMBL
  ENSSSCG00055021177 UniProtKB/TrEMBL
  ENSSSCG00060000777 UniProtKB/TrEMBL
  ENSSSCG00065075230 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000070320.2 UniProtKB/TrEMBL
  ENSSSCT00000076830.2 UniProtKB/TrEMBL
  ENSSSCT00000083510 ENTREZGENE
  ENSSSCT00000083510.1 UniProtKB/TrEMBL
  ENSSSCT00005072471.1 UniProtKB/TrEMBL
  ENSSSCT00015099441.1 UniProtKB/TrEMBL
  ENSSSCT00025081944.1 UniProtKB/TrEMBL
  ENSSSCT00030056587.1 UniProtKB/TrEMBL
  ENSSSCT00035012612.1 UniProtKB/TrEMBL
  ENSSSCT00040098999.1 UniProtKB/TrEMBL
  ENSSSCT00045000151.1 UniProtKB/TrEMBL
  ENSSSCT00050031322.1 UniProtKB/TrEMBL
  ENSSSCT00055041630.1 UniProtKB/TrEMBL
  ENSSSCT00060000896.1 UniProtKB/TrEMBL
  ENSSSCT00065103770.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
  Rab UniProtKB/TrEMBL
  Small_GTP-bd_dom UniProtKB/TrEMBL
  Small_GTPase UniProtKB/TrEMBL
KEGG Report ssc:100522830 UniProtKB/TrEMBL
NCBI Gene RAB6B ENTREZGENE
PANTHER RAS-RELATED PROTEIN RAB UniProtKB/TrEMBL
  RAS-RELATED PROTEIN RAB-6B UniProtKB/TrEMBL
Pfam Ras UniProtKB/TrEMBL
PRINTS RASTRNSFRMNG UniProtKB/TrEMBL
PROSITE RAB UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
SMART RAB UniProtKB/TrEMBL
  RAN UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A4X1TQ08_PIG UniProtKB/TrEMBL
  A0A5G2QQB0_PIG UniProtKB/TrEMBL
  A0A5G2R1S2_PIG UniProtKB/TrEMBL
  A0A8D0YQ49 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1FZZ8 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A5G2QGN9 UniProtKB/TrEMBL
VGNC ID VGNC:98272 ENTREZGENE