ABI2 (abl interactor 2) - Rat Genome Database

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Gene: ABI2 (abl interactor 2) Sus scrofa
Analyze
Symbol: ABI2
Name: abl interactor 2
RGD ID: 14138843
Description: ENCODES a protein that exhibits identical protein binding (ortholog); proline-rich region binding (ortholog); signaling adaptor activity (ortholog); INVOLVED IN camera-type eye development (ortholog); cell migration (ortholog); dendrite development (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); Pulmonary Arterial Hypertension (ortholog); FOUND IN actin filament (ortholog); adherens junction (ortholog); dendrite (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15106,776,625 - 106,900,334 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115106,776,627 - 106,903,889 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215118,142,372 - 118,186,661 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Genomics

Comparative Map Data
ABI2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15106,776,625 - 106,900,334 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115106,776,627 - 106,903,889 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215118,142,372 - 118,186,661 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ABI2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2203,328,280 - 203,447,728 (+)EnsemblGRCh38hg38GRCh38
GRCh382203,325,013 - 203,432,169 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh372204,193,117 - 204,296,892 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362203,901,248 - 204,005,137 (+)NCBINCBI36hg18NCBI36
Build 342204,018,667 - 204,117,837NCBI
Celera2197,986,427 - 198,051,711 (+)NCBI
Cytogenetic Map2q33.2NCBI
HuRef2196,040,502 - 196,144,417 (+)NCBIHuRef
CHM1_12204,199,587 - 204,303,476 (+)NCBICHM1_1
Abi2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39160,444,927 - 60,521,104 (+)NCBIGRCm39mm39
GRCm39 Ensembl160,448,778 - 60,520,317 (+)Ensembl
GRCm38160,405,768 - 60,481,945 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl160,409,619 - 60,481,158 (+)EnsemblGRCm38mm10GRCm38
MGSCv37160,466,642 - 60,538,002 (+)NCBIGRCm37mm9NCBIm37
MGSCv36160,354,344 - 60,425,704 (+)NCBImm8
Celera160,950,060 - 60,997,005 (+)NCBICelera
Cytogenetic Map1C2NCBI
Abi2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2961,856,379 - 61,904,029 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl961,827,139 - 61,905,699 (+)Ensembl
Rnor_6.0967,234,612 - 67,284,504 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl967,234,303 - 67,282,600 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0967,048,998 - 67,098,841 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4959,028,651 - 59,079,887 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1959,175,632 - 59,226,860 (+)NCBI
Celera959,284,973 - 59,332,321 (+)NCBICelera
Cytogenetic Map9q32NCBI
Abi2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545711,451,851 - 11,562,696 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545711,451,851 - 11,562,692 (-)NCBIChiLan1.0ChiLan1.0
ABI2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12B208,701,637 - 208,802,305 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B208,702,092 - 208,797,499 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02B90,561,708 - 90,663,072 (+)NCBIMhudiblu_PPA_v0panPan3
ABI2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13712,162,815 - 12,278,505 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3712,162,392 - 12,282,395 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3713,045,728 - 13,165,154 (+)NCBI
ROS_Cfam_1.03712,098,548 - 12,218,098 (+)NCBI
UMICH_Zoey_3.13712,055,942 - 12,175,414 (+)NCBI
UNSW_CanFamBas_1.03712,025,827 - 12,145,021 (+)NCBI
UU_Cfam_GSD_1.03712,019,907 - 12,139,569 (+)NCBI
Abi2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303160,346,621 - 160,466,671 (+)NCBI
SpeTri2.0NW_00493663130,109 - 101,748 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ABI2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11089,074,333 - 89,314,144 (+)NCBI
ChlSab1.1 Ensembl1089,075,798 - 89,181,235 (+)Ensembl
Vero_WHO_p1.0NW_023666040110,196,329 - 110,307,099 (-)NCBI
Abi2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476512,971,867 - 13,091,446 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2 3 23
Low 8 4 5 2 2 3 1
Below cutoff 1

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021075324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021075325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021075326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021075327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021075328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021075329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021075330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021075331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021075332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021075333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021075334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021075335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021075336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021075337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021075338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021075339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021075340 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021075341 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GFLN01028806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSSCT00000043165   ⟹   ENSSSCP00000037920
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl15106,776,700 - 106,900,334 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000049709   ⟹   ENSSSCP00000052377
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl15106,776,685 - 106,900,333 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000052536   ⟹   ENSSSCP00000058653
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl15106,776,719 - 106,900,332 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000052580   ⟹   ENSSSCP00000059554
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl15106,776,685 - 106,900,333 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000053691   ⟹   ENSSSCP00000047668
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl15106,776,625 - 106,900,333 (+)Ensembl
RefSeq Acc Id: XM_021075324   ⟹   XP_020930983
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.115106,776,701 - 106,903,889 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021075325   ⟹   XP_020930984
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.115106,776,642 - 106,903,889 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021075326   ⟹   XP_020930985
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.115106,776,688 - 106,900,327 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021075327   ⟹   XP_020930986
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.115106,776,627 - 106,900,327 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021075328   ⟹   XP_020930987
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.115106,776,635 - 106,900,324 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021075329   ⟹   XP_020930988
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.115106,776,642 - 106,900,327 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021075330   ⟹   XP_020930989
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.115106,776,642 - 106,903,889 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021075331   ⟹   XP_020930990
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.115106,776,642 - 106,903,889 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021075332   ⟹   XP_020930991
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.115106,776,642 - 106,903,889 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021075333   ⟹   XP_020930992
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.115106,776,810 - 106,900,324 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021075334   ⟹   XP_020930993
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.115106,776,682 - 106,900,336 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021075335   ⟹   XP_020930994
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.115106,776,642 - 106,903,889 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021075336   ⟹   XP_020930995
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.115106,776,642 - 106,903,889 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021075337   ⟹   XP_020930996
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.115106,776,635 - 106,903,889 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021075338   ⟹   XP_020930997
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.115106,776,691 - 106,900,324 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021075339   ⟹   XP_020930998
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.115106,776,642 - 106,903,889 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021075340   ⟹   XP_020930999
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.115106,776,642 - 106,903,889 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021075341   ⟹   XP_020931000
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.115106,776,642 - 106,903,889 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_020930986   ⟸   XM_021075327
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_020930996   ⟸   XM_021075337
- Peptide Label: isoform X14
- Sequence:
RefSeq Acc Id: XP_020930987   ⟸   XM_021075328
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_020930984   ⟸   XM_021075325
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_020930994   ⟸   XM_021075335
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_020930998   ⟸   XM_021075339
- Peptide Label: isoform X16
- Sequence:
RefSeq Acc Id: XP_020931000   ⟸   XM_021075341
- Peptide Label: isoform X18
- Sequence:
RefSeq Acc Id: XP_020930989   ⟸   XM_021075330
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_020930990   ⟸   XM_021075331
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_020930995   ⟸   XM_021075336
- Peptide Label: isoform X13
- Sequence:
RefSeq Acc Id: XP_020930999   ⟸   XM_021075340
- Peptide Label: isoform X17
- Sequence:
RefSeq Acc Id: XP_020930991   ⟸   XM_021075332
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_020930988   ⟸   XM_021075329
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_020930993   ⟸   XM_021075334
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_020930985   ⟸   XM_021075326
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_020930997   ⟸   XM_021075338
- Peptide Label: isoform X15
- Sequence:
RefSeq Acc Id: XP_020930983   ⟸   XM_021075324
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020930992   ⟸   XM_021075333
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: ENSSSCP00000052377   ⟸   ENSSSCT00000049709
RefSeq Acc Id: ENSSSCP00000059554   ⟸   ENSSSCT00000052580
RefSeq Acc Id: ENSSSCP00000058653   ⟸   ENSSSCT00000052536
RefSeq Acc Id: ENSSSCP00000047668   ⟸   ENSSSCT00000053691
RefSeq Acc Id: ENSSSCP00000037920   ⟸   ENSSSCT00000043165
Protein Domains
SH3   t-SNARE coiled-coil homology


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000034630 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070021669 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000037920 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000047668 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000052377 UniProtKB/TrEMBL
  ENSSSCP00000058653 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000059554 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00070036270 UniProtKB/TrEMBL
  ENSSSCP00070036279 UniProtKB/TrEMBL
  ENSSSCP00070036290 UniProtKB/TrEMBL
  ENSSSCP00070036319 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000043165 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000049709 UniProtKB/TrEMBL
  ENSSSCT00000052536 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000052580 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000053691 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00070043111 UniProtKB/TrEMBL
  ENSSSCT00070043121 UniProtKB/TrEMBL
  ENSSSCT00070043133 UniProtKB/TrEMBL
  ENSSSCT00070043168 UniProtKB/TrEMBL
InterPro ABI UniProtKB/TrEMBL
  ABI2 UniProtKB/TrEMBL
  Abi2_SH3 UniProtKB/TrEMBL
  Abl-interactor_HHR_dom UniProtKB/TrEMBL
  SH3-like_dom_sf UniProtKB/TrEMBL
  SH3_domain UniProtKB/TrEMBL
  T_SNARE_dom UniProtKB/TrEMBL
NCBI Gene ABI2 ENTREZGENE
PANTHER PTHR10460 UniProtKB/TrEMBL
  PTHR10460:SF26 UniProtKB/TrEMBL
Pfam Abi_HHR UniProtKB/TrEMBL
  SH3_1 UniProtKB/TrEMBL
PRINTS SH3DOMAIN UniProtKB/TrEMBL
PROSITE SH3 UniProtKB/TrEMBL
  T_SNARE UniProtKB/TrEMBL
SMART SH3 UniProtKB/TrEMBL
Superfamily-SCOP SSF50044 UniProtKB/TrEMBL
UniProt A0A287A2E5_PIG UniProtKB/TrEMBL
  A0A287AUY1_PIG UniProtKB/TrEMBL
  A0A287B8G8_PIG UniProtKB/TrEMBL
  A0A287BPV8_PIG UniProtKB/TrEMBL
  A0A287BSQ3_PIG UniProtKB/TrEMBL
  A0A4X1V0Z1_PIG UniProtKB/TrEMBL
  A0A4X1V3V9_PIG UniProtKB/TrEMBL
  A0A4X1V3X3_PIG UniProtKB/TrEMBL
  A0A4X1V558_PIG UniProtKB/TrEMBL
VGNC ID VGNC:96027 ENTREZGENE