CD2AP (CD2 associated protein) - Rat Genome Database

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Gene: CD2AP (CD2 associated protein) Sus scrofa
Analyze
Symbol: CD2AP
Name: CD2 associated protein
RGD ID: 14138677
Description: ENCODES a protein that exhibits beta-catenin binding (ortholog); cadherin binding (ortholog); protein C-terminus binding (ortholog); INVOLVED IN cell migration (ortholog); cell-cell adhesion (ortholog); negative regulation of transforming growth factor beta1 production (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); COVID-19 (ortholog); focal segmental glomerulosclerosis (ortholog); FOUND IN axon (ortholog); cell leading edge (ortholog); dendrite (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: CD2-associated protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl742,217,588 - 42,332,518 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1742,218,016 - 42,332,523 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2748,870,223 - 48,952,250 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Genomics

Comparative Map Data
CD2AP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl742,217,588 - 42,332,518 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1742,218,016 - 42,332,523 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2748,870,223 - 48,952,250 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CD2AP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl647,477,789 - 47,627,263 (+)EnsemblGRCh38hg38GRCh38
GRCh38647,477,746 - 47,627,263 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37647,445,525 - 47,594,999 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36647,553,484 - 47,702,958 (+)NCBINCBI36hg18NCBI36
Build 34647,553,898 - 47,702,606NCBI
Celera649,001,627 - 49,151,084 (+)NCBI
Cytogenetic Map6p12.3NCBI
HuRef647,172,874 - 47,322,780 (+)NCBIHuRef
CHM1_1647,448,327 - 47,597,835 (+)NCBICHM1_1
Cd2ap
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391743,059,857 - 43,187,595 (-)NCBIGRCm39mm39
GRCm39 Ensembl1743,103,842 - 43,187,556 (-)Ensembl
GRCm381742,748,887 - 42,876,707 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1742,792,951 - 42,876,665 (-)EnsemblGRCm38mm10GRCm38
MGSCv371742,929,900 - 43,013,373 (-)NCBIGRCm37mm9NCBIm37
MGSCv361742,256,435 - 42,352,155 (-)NCBImm8
Celera1746,201,889 - 46,261,450 (-)NCBICelera
Cytogenetic Map17B3NCBI
Cd2ap
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2918,086,744 - 18,182,744 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl918,086,984 - 18,182,199 (+)Ensembl
Rnor_6.0920,794,680 - 20,858,438 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl920,765,296 - 20,858,504 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0919,659,503 - 19,720,953 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4913,827,015 - 13,888,338 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1913,824,339 - 13,885,656 (+)NCBI
Celera915,825,287 - 15,886,480 (+)NCBICelera
Cytogenetic Map9q13NCBI
Cd2ap
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543711,983,311 - 12,091,100 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543712,005,399 - 12,087,014 (+)NCBIChiLan1.0ChiLan1.0
CD2AP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1648,328,836 - 48,474,166 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl648,328,863 - 48,474,163 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0647,065,284 - 47,210,746 (+)NCBIMhudiblu_PPA_v0panPan3
CD2AP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11215,538,215 - 15,683,619 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1215,538,356 - 15,681,011 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1215,569,237 - 15,714,616 (+)NCBI
ROS_Cfam_1.01216,041,717 - 16,186,523 (+)NCBI
ROS_Cfam_1.0 Ensembl1216,041,451 - 16,186,100 (+)Ensembl
UMICH_Zoey_3.11215,549,899 - 15,695,706 (+)NCBI
UNSW_CanFamBas_1.01215,642,957 - 15,788,194 (+)NCBI
UU_Cfam_GSD_1.01215,789,659 - 15,935,714 (+)NCBI
LOC101969432
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494650,972,198 - 51,069,620 (+)NCBI
SpeTri2.0NW_00493647612,890,595 - 12,989,046 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC103221401
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11724,664,245 - 24,815,786 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1724,663,872 - 24,815,829 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604447,487,056 - 47,639,257 (+)NCBIVero_WHO_p1.0
Cd2ap
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475413,420,594 - 13,511,672 (-)NCBIHetGla_female_1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 2 3 5 3 2 3 1
Low 2 2 20 2
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000001932   ⟹   ENSSSCP00000001885
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl742,252,161 - 42,321,444 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000024470   ⟹   ENSSSCP00000027682
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl742,218,290 - 42,332,518 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000047158   ⟹   ENSSSCP00000031287
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl742,218,290 - 42,332,518 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000053413   ⟹   ENSSSCP00000040049
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl742,241,254 - 42,332,518 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000069653   ⟹   ENSSSCP00000073473
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl742,252,160 - 42,330,770 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000087489   ⟹   ENSSSCP00000063204
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl742,217,588 - 42,330,757 (+)Ensembl
RefSeq Acc Id: NM_001317083   ⟹   NP_001304012
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1742,241,254 - 42,329,462 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021098031   ⟹   XP_020953690
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1742,218,020 - 42,332,523 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021098032   ⟹   XP_020953691
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1742,218,016 - 42,332,523 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001304012 (Get FASTA)   NCBI Sequence Viewer  
  XP_020953690 (Get FASTA)   NCBI Sequence Viewer  
  XP_020953691 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AHY86300 (Get FASTA)   NCBI Sequence Viewer  
  JAA74158 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_020953691   ⟸   XM_021098032
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_020953690   ⟸   XM_021098031
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001304012   ⟸   NM_001317083
- UniProtKB: F1RQ14 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000027682   ⟸   ENSSSCT00000024470
RefSeq Acc Id: ENSSSCP00000001885   ⟸   ENSSSCT00000001932
RefSeq Acc Id: ENSSSCP00000073473   ⟸   ENSSSCT00000069653
RefSeq Acc Id: ENSSSCP00000040049   ⟸   ENSSSCT00000053413
RefSeq Acc Id: ENSSSCP00000063204   ⟸   ENSSSCT00000087489
RefSeq Acc Id: ENSSSCP00000031287   ⟸   ENSSSCT00000047158
Protein Domains
SH3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000030197 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070020971 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000001885 UniProtKB/TrEMBL
  ENSSSCP00000027682 UniProtKB/TrEMBL
  ENSSSCP00000031287 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000040049 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000063204 UniProtKB/TrEMBL
  ENSSSCP00000073473 UniProtKB/TrEMBL
  ENSSSCP00070035084 UniProtKB/TrEMBL
  ENSSSCP00070035092 UniProtKB/TrEMBL
  ENSSSCP00070035116 UniProtKB/TrEMBL
  ENSSSCP00070035123 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000001932 UniProtKB/TrEMBL
  ENSSSCT00000024470 UniProtKB/TrEMBL
  ENSSSCT00000047158 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000053413 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000069653 UniProtKB/TrEMBL
  ENSSSCT00000087489 UniProtKB/TrEMBL
  ENSSSCT00070041781 UniProtKB/TrEMBL
  ENSSSCT00070041789 UniProtKB/TrEMBL
  ENSSSCT00070041813 UniProtKB/TrEMBL
  ENSSSCT00070041821 UniProtKB/TrEMBL
InterPro CD2AP UniProtKB/TrEMBL
  CD2AP_SH3_1 UniProtKB/TrEMBL
  CD2AP_SH3_3 UniProtKB/TrEMBL
  CD2AP_SH_2 UniProtKB/TrEMBL
  SH3-like_dom_sf UniProtKB/TrEMBL
  SH3_domain UniProtKB/TrEMBL
KEGG Report ssc:100154585 UniProtKB/TrEMBL
NCBI Gene CD2AP ENTREZGENE
PANTHER PTHR14167:SF23 UniProtKB/TrEMBL
Pfam SH3_1 UniProtKB/TrEMBL
  SH3_9 UniProtKB/TrEMBL
PRINTS SH3DOMAIN UniProtKB/TrEMBL
PROSITE SH3 UniProtKB/TrEMBL
SMART SH3 UniProtKB/TrEMBL
Superfamily-SCOP SSF50044 UniProtKB/TrEMBL
UniProt A0A4X1V0H4_PIG UniProtKB/TrEMBL
  A0A4X1V0K1_PIG UniProtKB/TrEMBL
  A0A4X1V1F3_PIG UniProtKB/TrEMBL
  A0A4X1V1I4_PIG UniProtKB/TrEMBL
  A0A5G2QYB3_PIG UniProtKB/TrEMBL
  A0A5G2R875_PIG UniProtKB/TrEMBL
  A0A5K1VMZ0_PIG UniProtKB/TrEMBL
  F1RQ14 ENTREZGENE, UniProtKB/TrEMBL
  I3L7D4_PIG UniProtKB/TrEMBL
  M3VH74_PIG UniProtKB/TrEMBL
UniProt Secondary A0A024A2N6 UniProtKB/TrEMBL
  A0A287A7U0 UniProtKB/TrEMBL
VGNC ID VGNC:86406 ENTREZGENE