RAD23A (RAD23 homolog A, nucleotide excision repair protein) - Rat Genome Database

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Gene: RAD23A (RAD23 homolog A, nucleotide excision repair protein) Sus scrofa
Analyze
Symbol: RAD23A
Name: RAD23 homolog A, nucleotide excision repair protein
RGD ID: 14138229
Description: ENCODES a protein that exhibits damaged DNA binding (inferred); kinase binding (inferred); polyubiquitin modification-dependent protein binding (inferred); INVOLVED IN DNA damage response (ortholog); PARTICIPATES IN nucleotide excision repair pathway; ASSOCIATED WITH alpha-mannosidosis (ortholog); Charcot-Marie-Tooth disease dominant intermediate B (ortholog); Disease Progression (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred); Golgi apparatus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: UV excision repair protein RAD23 homolog A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl266,084,668 - 66,096,329 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1266,090,089 - 66,096,477 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2266,289,387 - 66,295,777 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:15679890   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RAD23A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl266,084,668 - 66,096,329 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1266,090,089 - 66,096,477 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2266,289,387 - 66,295,777 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RAD23A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381912,945,862 - 12,953,642 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1912,945,855 - 12,953,642 (+)EnsemblGRCh38hg38GRCh38
GRCh371913,056,676 - 13,064,456 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361912,917,654 - 12,925,455 (+)NCBINCBI36Build 36hg18NCBI36
Build 341912,917,653 - 12,925,455NCBI
Celera1912,946,385 - 12,954,184 (+)NCBICelera
Cytogenetic Map19p13.13NCBI
HuRef1912,628,527 - 12,636,354 (+)NCBIHuRef
CHM1_11913,057,148 - 13,064,977 (+)NCBICHM1_1
T2T-CHM13v2.01913,070,347 - 13,078,125 (+)NCBIT2T-CHM13v2.0
Rad23a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39885,561,540 - 85,567,361 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl885,560,648 - 85,567,294 (-)EnsemblGRCm39 Ensembl
GRCm38884,834,927 - 84,840,652 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl884,834,019 - 84,840,665 (-)EnsemblGRCm38mm10GRCm38
MGSCv37887,358,551 - 87,364,540 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36887,724,757 - 87,730,746 (-)NCBIMGSCv36mm8
Celera889,133,785 - 89,139,795 (-)NCBICelera
Cytogenetic Map8C3NCBI
cM Map841.2NCBI
Rad23a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81940,219,235 - 40,225,543 (+)NCBIGRCr8
mRatBN7.21923,313,563 - 23,320,702 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1923,314,797 - 23,320,695 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1930,137,698 - 30,143,550 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01930,792,060 - 30,797,910 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01933,014,743 - 33,020,595 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01925,949,488 - 25,956,677 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1925,949,490 - 25,955,391 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01936,925,111 - 36,931,350 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41924,971,070 - 24,976,901 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11924,975,895 - 24,981,725 (+)NCBI
Celera1922,871,740 - 22,877,567 (+)NCBICelera
Cytogenetic Map19q11NCBI
Rad23a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541531,991,479 - 32,000,250 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541531,991,478 - 31,997,277 (+)NCBIChiLan1.0ChiLan1.0
RAD23A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22017,875,159 - 17,883,093 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11916,875,907 - 16,883,738 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01912,508,232 - 12,516,068 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11913,250,718 - 13,258,482 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1913,250,718 - 13,258,482 (+)Ensemblpanpan1.1panPan2
RAD23A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12049,244,330 - 49,250,058 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2049,241,358 - 49,250,039 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2049,116,577 - 49,122,315 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02049,761,195 - 49,766,929 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2049,761,198 - 49,766,944 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12048,972,391 - 48,978,124 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02049,398,877 - 49,404,610 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02049,641,399 - 49,647,135 (-)NCBIUU_Cfam_GSD_1.0
Rad23a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118208,347,187 - 208,353,329 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366592,001,301 - 2,010,215 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366592,001,356 - 2,007,520 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAD23A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1611,625,464 - 11,633,922 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl611,625,458 - 11,637,419 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660748,153,390 - 8,161,974 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rad23a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624901516,855 - 523,337 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624901515,761 - 522,845 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RAD23A
90 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2
Low 9 4 3 5 23 2 3 3
Below cutoff 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000015021   ⟹   ENSSSCP00000014616
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl266,090,786 - 66,096,329 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000050773   ⟹   ENSSSCP00000046499
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl266,090,001 - 66,096,317 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000081167   ⟹   ENSSSCP00000064084
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl266,084,668 - 66,096,324 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000093804   ⟹   ENSSSCP00000076734
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl266,086,624 - 66,096,324 (-)Ensembl
RefSeq Acc Id: XM_003123338   ⟹   XP_003123386
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1266,090,089 - 66,096,477 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005652877   ⟹   XP_005652934
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1266,090,089 - 66,096,477 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005652934   ⟸   XM_005652877
- Peptide Label: isoform X2
- UniProtKB: A0A4X1TDA9 (UniProtKB/TrEMBL),   A0A287ARC6 (UniProtKB/TrEMBL),   A0A8D1NB21 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003123386   ⟸   XM_003123338
- Peptide Label: isoform X1
- UniProtKB: A0A8D0M863 (UniProtKB/TrEMBL),   A0A287ARC6 (UniProtKB/TrEMBL),   A0A8D1NB21 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000014616   ⟸   ENSSSCT00000015021
RefSeq Acc Id: ENSSSCP00000046499   ⟸   ENSSSCT00000050773
RefSeq Acc Id: ENSSSCP00000064084   ⟸   ENSSSCT00000081167
RefSeq Acc Id: ENSSSCP00000076734   ⟸   ENSSSCT00000093804
Protein Domains
UBA   Ubiquitin-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000013747 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005045815 UniProtKB/TrEMBL
  ENSSSCG00025060435 UniProtKB/TrEMBL
  ENSSSCG00030008798 UniProtKB/TrEMBL
  ENSSSCG00035043013 UniProtKB/TrEMBL
  ENSSSCG00040013995 UniProtKB/TrEMBL
  ENSSSCG00045023940 UniProtKB/TrEMBL
  ENSSSCG00050060136 UniProtKB/TrEMBL
  ENSSSCG00055021767 UniProtKB/TrEMBL
  ENSSSCG00060014503 UniProtKB/TrEMBL
  ENSSSCG00065018721 UniProtKB/TrEMBL
  ENSSSCG00070007766 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000015021 ENTREZGENE
  ENSSSCT00000015021.5 UniProtKB/TrEMBL
  ENSSSCT00000050773 ENTREZGENE
  ENSSSCT00000050773.2 UniProtKB/TrEMBL
  ENSSSCT00000081167.2 UniProtKB/TrEMBL
  ENSSSCT00000093804.1 UniProtKB/TrEMBL
  ENSSSCT00005074081.1 UniProtKB/TrEMBL
  ENSSSCT00005074098.1 UniProtKB/TrEMBL
  ENSSSCT00025082729.1 UniProtKB/TrEMBL
  ENSSSCT00025082916.1 UniProtKB/TrEMBL
  ENSSSCT00025083068.1 UniProtKB/TrEMBL
  ENSSSCT00030012028.1 UniProtKB/TrEMBL
  ENSSSCT00030012054.1 UniProtKB/TrEMBL
  ENSSSCT00035057194.1 UniProtKB/TrEMBL
  ENSSSCT00035057196.1 UniProtKB/TrEMBL
  ENSSSCT00035057202.1 UniProtKB/TrEMBL
  ENSSSCT00040018661.1 UniProtKB/TrEMBL
  ENSSSCT00040018710.1 UniProtKB/TrEMBL
  ENSSSCT00040018749.1 UniProtKB/TrEMBL
  ENSSSCT00045041025.1 UniProtKB/TrEMBL
  ENSSSCT00045041127.1 UniProtKB/TrEMBL
  ENSSSCT00050081927.1 UniProtKB/TrEMBL
  ENSSSCT00050081932.1 UniProtKB/TrEMBL
  ENSSSCT00055043148.1 UniProtKB/TrEMBL
  ENSSSCT00055043291.1 UniProtKB/TrEMBL
  ENSSSCT00055043379.1 UniProtKB/TrEMBL
  ENSSSCT00060019291.1 UniProtKB/TrEMBL
  ENSSSCT00060019310.1 UniProtKB/TrEMBL
  ENSSSCT00065024871.1 UniProtKB/TrEMBL
  ENSSSCT00065024876.1 UniProtKB/TrEMBL
  ENSSSCT00065024885.1 UniProtKB/TrEMBL
  ENSSSCT00070015362.1 UniProtKB/TrEMBL
  ENSSSCT00070015376.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.540 UniProtKB/TrEMBL
  DNA helicase RuvA subunit, C-terminal domain UniProtKB/TrEMBL
InterPro Rad23 UniProtKB/TrEMBL
  RAD23A/B_UBA1 UniProtKB/TrEMBL
  STI1_HS-bd UniProtKB/TrEMBL
  UBA UniProtKB/TrEMBL
  UBA-like_sf UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/TrEMBL
  Ubiquitin_dom UniProtKB/TrEMBL
  XPC-bd UniProtKB/TrEMBL
  XPC-bd_sf UniProtKB/TrEMBL
KEGG Report ssc:100524483 UniProtKB/TrEMBL
NCBI Gene RAD23A ENTREZGENE
PANTHER UV EXCISION REPAIR PROTEIN RAD23 UniProtKB/TrEMBL
  UV EXCISION REPAIR PROTEIN RAD23 HOMOLOG A UniProtKB/TrEMBL
Pfam UBA UniProtKB/TrEMBL
  ubiquitin UniProtKB/TrEMBL
  XPC-binding UniProtKB/TrEMBL
PRINTS RAD23PROTEIN UniProtKB/TrEMBL
PROSITE UBA UniProtKB/TrEMBL
  UBIQUITIN_2 UniProtKB/TrEMBL
SMART STI1 UniProtKB/TrEMBL
  UBA UniProtKB/TrEMBL
  UBQ UniProtKB/TrEMBL
Superfamily-SCOP SSF101238 UniProtKB/TrEMBL
  SSF46934 UniProtKB/TrEMBL
  SSF54236 UniProtKB/TrEMBL
UniProt A0A287ARC6 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TBV5_PIG UniProtKB/TrEMBL
  A0A4X1TDA9 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2QPT2_PIG UniProtKB/TrEMBL
  A0A8D0M863 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0UX56_PIG UniProtKB/TrEMBL
  A0A8D1DJT2_PIG UniProtKB/TrEMBL
  A0A8D1NB21 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FBN4_PIG UniProtKB/TrEMBL
UniProt Secondary F1SD96 UniProtKB/TrEMBL
VGNC ID VGNC:92055 ENTREZGENE