RAB9B (RAB9B, member RAS oncogene family) - Rat Genome Database
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Gene: RAB9B (RAB9B, member RAS oncogene family) Sus scrofa
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Symbol: RAB9B
Name: RAB9B, member RAS oncogene family
RGD ID: 14138019
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN Rab protein signal transduction (inferred); ASSOCIATED WITH autistic disorder (ortholog); Developmental Disabilities (ortholog); genetic disease (ortholog); FOUND IN phagocytic vesicle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: ras-related protein Rab-9B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX84,721,274 - 84,732,990 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X84,721,269 - 84,733,000 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X98,599,279 - 98,610,984 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
RAB9B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX84,721,274 - 84,732,990 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X84,721,269 - 84,733,000 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X98,599,279 - 98,610,984 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RAB9B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 EnsemblX103,822,327 - 103,832,257 (-)EnsemblGRCh38hg38GRCh38
GRCh38X103,776,324 - 103,832,257 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37X103,031,252 - 103,087,187 (-)NCBIGRCh37GRCh37hg19GRCh37
GRCh37X103,077,255 - 103,087,212 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X102,966,607 - 102,973,814 (-)NCBINCBI36hg18NCBI36
Build 34X102,886,095 - 102,893,303NCBI
CeleraX103,516,271 - 103,526,228 (-)NCBI
Cytogenetic MapXq22.2NCBI
HuRefX92,732,783 - 92,742,676 (-)NCBIHuRef
CHM1_1X102,970,244 - 102,980,201 (-)NCBICHM1_1
Rab9b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X135,758,896 - 135,769,305 (-)NCBIGRCm39mm39
GRCm38X136,858,147 - 136,868,556 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX136,858,147 - 136,868,755 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X133,392,690 - 133,403,079 (-)NCBIGRCm37mm9NCBIm37
MGSCv36X132,204,515 - 132,214,904 (-)NCBImm8
CeleraX120,140,142 - 120,150,492 (-)NCBICelera
Cytogenetic MapXF1NCBI
Rab9b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X100,220,897 - 100,231,591 (-)NCBI
Rnor_6.0 EnsemblX107,531,404 - 107,542,510 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0X107,531,404 - 107,542,510 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X107,414,930 - 107,426,468 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X124,525,742 - 124,528,535 (-)NCBIRGSC3.4rn4RGSC3.4
CeleraX101,055,137 - 101,065,806 (-)NCBICelera
Cytogenetic MapXq32NCBI
Rab9b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955548825,208 - 829,815 (-)NCBIChiLan1.0ChiLan1.0
RAB9B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X103,442,543 - 103,451,813 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX103,444,776 - 103,445,381 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0X93,060,899 - 93,070,911 (-)NCBIMhudiblu_PPA_v0panPan3
RAB9B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 EnsemblX77,231,441 - 77,239,001 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1X77,228,609 - 77,238,344 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Rab9b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493649910,501,837 - 10,506,793 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAB9B
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X91,716,741 - 91,727,167 (-)NCBI
ChlSab1.1 EnsemblX91,719,610 - 91,720,212 (-)Ensembl
Rab9b
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462495488,909 - 102,637 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system nervous system
High
Medium 13
Low 2 3 10
Below cutoff 4

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000049396   ⟹   ENSSSCP00000055391
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX84,721,274 - 84,732,990 (-)Ensembl
RefSeq Acc Id: XM_003135272   ⟹   XP_003135320
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X84,721,269 - 84,733,000 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003135320 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003135320   ⟸   XM_003135272
- UniProtKB: A0A287BH53 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000055391   ⟸   ENSSSCT00000049396


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000032672 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070028862 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000055391 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00070049227 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000049396 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00070057905 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
  Rab9 UniProtKB/TrEMBL
  Small_GTP-bd_dom UniProtKB/TrEMBL
  Small_GTPase UniProtKB/TrEMBL
KEGG Report ssc:100525674 UniProtKB/TrEMBL
NCBI Gene RAB9B ENTREZGENE
Pfam Ras UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
TIGRFAMs small_GTP UniProtKB/TrEMBL
UniProt A0A287BH53 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1W519_PIG UniProtKB/TrEMBL
VGNC ID VGNC:98278 ENTREZGENE