RNF170 (ring finger protein 170) - Rat Genome Database
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Gene: RNF170 (ring finger protein 170) Sus scrofa
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Symbol: RNF170
Name: ring finger protein 170
RGD ID: 14136045
Description: ENCODES a protein that exhibits metal ion binding (inferred); ubiquitin protein ligase activity (inferred); INVOLVED IN protein ubiquitination (inferred); ASSOCIATED WITH autosomal dominant sensory ataxia 1 (ortholog); congenital muscular dystrophy-dystroglycanopathy type A12 (ortholog); Idiopathic Basal Ganglia Calcification 1 (ortholog); FOUND IN endoplasmic reticulum membrane (inferred); integral component of membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Also known as: E3 ubiquitin-protein ligase RNF170
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1711,780,129 - 11,817,483 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11711,777,942 - 11,817,920 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21712,589,027 - 12,602,225 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712  


Genomics

Comparative Map Data
RNF170
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1711,780,129 - 11,817,483 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11711,777,942 - 11,817,920 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21712,589,027 - 12,602,225 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RNF170
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl842,849,637 - 42,897,290 (-)EnsemblGRCh38hg38GRCh38
GRCh38842,849,637 - 42,897,294 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37842,704,780 - 42,751,748 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36842,829,548 - 42,870,939 (-)NCBINCBI36hg18NCBI36
Build 34842,829,547 - 42,870,939NCBI
Celera841,652,777 - 41,700,691 (-)NCBI
Cytogenetic Map8p11.21NCBI
HuRef841,227,278 - 41,275,153 (-)NCBIHuRef
CHM1_1842,751,675 - 42,798,772 (-)NCBICHM1_1
Rnf170
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39826,609,396 - 26,633,903 (+)NCBIGRCm39mm39
GRCm39 Ensembl826,609,396 - 26,641,818 (+)Ensembl
GRCm38826,119,368 - 26,143,875 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl826,119,368 - 26,151,790 (+)EnsemblGRCm38mm10GRCm38
MGSCv37827,229,852 - 27,254,343 (+)NCBIGRCm37mm9NCBIm37
MGSCv36827,585,066 - 27,607,163 (+)NCBImm8
Celera827,589,477 - 27,613,755 (+)NCBICelera
Cytogenetic Map8A2NCBI
Rnf170
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21665,928,886 - 65,954,092 (-)NCBI
Rnor_6.0 Ensembl1670,687,487 - 70,705,128 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01670,684,886 - 70,710,147 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01670,350,525 - 70,376,322 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1663,840,220 - 63,865,468 (-)NCBICelera
Cytogenetic Map16q12.4NCBI
Rnf170
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545713,096,483 - 13,147,637 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545713,093,914 - 13,148,800 (-)NCBIChiLan1.0ChiLan1.0
RNF170
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1839,541,479 - 39,588,163 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl839,541,479 - 39,588,163 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0842,097,900 - 42,145,327 (-)NCBIMhudiblu_PPA_v0panPan3
RNF170
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1622,900,313 - 22,927,125 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11622,901,224 - 22,929,990 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Rnf170
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004937108111,111 - 147,077 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RNF170
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1840,852,995 - 40,896,800 (-)NCBI
ChlSab1.1 Ensembl840,850,552 - 40,896,887 (-)Ensembl
Rnf170
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478067,160 - 127,620 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 3 2 2 16 2 2 2
Low 7 4 1 3 2 7 1 1
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000045954   ⟹   ENSSSCP00000055094
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1711,780,129 - 11,816,049 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000054079   ⟹   ENSSSCP00000053350
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1711,780,130 - 11,817,483 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000083340   ⟹   ENSSSCP00000071011
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1711,785,865 - 11,816,049 (-)Ensembl
RefSeq Acc Id: XM_021077851   ⟹   XP_020933510
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11711,777,942 - 11,817,920 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021077852   ⟹   XP_020933511
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11711,777,942 - 11,817,819 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021077853   ⟹   XP_020933512
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11711,777,942 - 11,817,816 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021077854   ⟹   XP_020933513
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11711,777,942 - 11,817,816 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020933510 (Get FASTA)   NCBI Sequence Viewer  
  XP_020933511 (Get FASTA)   NCBI Sequence Viewer  
  XP_020933512 (Get FASTA)   NCBI Sequence Viewer  
  XP_020933513 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_020933510   ⟸   XM_021077851
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020933511   ⟸   XM_021077852
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020933512   ⟸   XM_021077853
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_020933513   ⟸   XM_021077854
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSSSCP00000071011   ⟸   ENSSSCT00000083340
RefSeq Acc Id: ENSSSCP00000053350   ⟸   ENSSSCT00000054079
RefSeq Acc Id: ENSSSCP00000055094   ⟸   ENSSSCT00000045954
Protein Domains
RING-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000036001 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070015597 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000053350 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000055094 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000071011 UniProtKB/TrEMBL
  ENSSSCP00070025537 UniProtKB/TrEMBL
  ENSSSCP00070025540 UniProtKB/TrEMBL
  ENSSSCP00070025542 UniProtKB/TrEMBL
  ENSSSCP00070025544 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000045954 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000054079 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000083340 UniProtKB/TrEMBL
  ENSSSCT00070030615 UniProtKB/TrEMBL
  ENSSSCT00070030618 UniProtKB/TrEMBL
  ENSSSCT00070030621 UniProtKB/TrEMBL
  ENSSSCT00070030624 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
InterPro DUF1232 UniProtKB/TrEMBL
  RNF170 UniProtKB/TrEMBL
  Znf_C3HC4_RING-type UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/TrEMBL
NCBI Gene RNF170 ENTREZGENE
PANTHER PTHR22894 UniProtKB/TrEMBL
  PTHR22894:SF1 UniProtKB/TrEMBL
Pfam DUF1232 UniProtKB/TrEMBL
  zf-C3HC4 UniProtKB/TrEMBL
PROSITE ZF_RING_1 UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
SMART RING UniProtKB/TrEMBL
UniProt A0A287BA21_PIG UniProtKB/TrEMBL
  A0A287BG35_PIG UniProtKB/TrEMBL
  A0A4X1UBB4_PIG UniProtKB/TrEMBL
  A0A4X1UBY4_PIG UniProtKB/TrEMBL
  A0A5G2R1F4_PIG UniProtKB/TrEMBL
VGNC ID VGNC:96076 ENTREZGENE