AGO3 (argonaute RISC catalytic component 3) - Rat Genome Database

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Gene: AGO3 (argonaute RISC catalytic component 3) Sus scrofa
Analyze
No known orthologs.
Symbol: AGO3 (Ensembl: AGO1)
Name: argonaute RISC catalytic component 3 (Ensembl:argonaute RISC component 1)
RGD ID: 14135549
Description: ENCODES a protein that exhibits miRNA binding (inferred); nucleic acid binding (inferred); RNA binding (inferred); INVOLVED IN miRNA-mediated gene silencing by inhibition of translation (inferred); regulation of stem cell proliferation (inferred); regulation of translation (inferred); FOUND IN cytoplasm (inferred); P-body (inferred); ribonucleoprotein complex (inferred)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: argonaute 3; argonaute 3, RISC catalytic component; EIF2C3; eukaryotic translation initiation factor 2C, 3; protein argonaute-3
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl692,036,834 - 92,215,149 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1692,081,763 - 92,225,811 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2685,419,248 - 85,460,817 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:20454920   PMID:22301074  


Genomics

Variants

.
Variants in AGO3
2705 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 3 2 3 5 2 12 3 1
Low 7 2 11 2 2
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000004026   ⟹   ENSSSCP00000003935
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl692,037,519 - 92,076,468 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000004027   ⟹   ENSSSCP00000003936
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl692,038,017 - 92,215,149 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000038526   ⟹   ENSSSCP00000057743
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl692,042,817 - 92,076,468 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000056463   ⟹   ENSSSCP00000055926
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl692,042,388 - 92,076,468 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000064566   ⟹   ENSSSCP00000034205
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl692,042,399 - 92,215,149 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000066730   ⟹   ENSSSCP00000062649
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl692,043,182 - 92,076,468 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000080755   ⟹   ENSSSCP00000073605
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl692,042,627 - 92,076,468 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000083850   ⟹   ENSSSCP00000064735
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl692,042,962 - 92,076,468 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000093277   ⟹   ENSSSCP00000079147
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl691,984,303 - 92,076,468 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000097037   ⟹   ENSSSCP00000075585
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl692,042,728 - 92,076,468 (+)Ensembl
RefSeq Acc Id: NM_001194974   ⟹   NP_001181903
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1692,081,965 - 92,212,129 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021093288   ⟹   XP_020948947
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1692,081,763 - 92,225,811 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021093289   ⟹   XP_020948948
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1692,081,764 - 92,225,811 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021093290   ⟹   XP_020948949
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1692,102,460 - 92,225,811 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021093291   ⟹   XP_020948950
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1692,081,770 - 92,225,811 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001181903 (Get FASTA)   NCBI Sequence Viewer  
  XP_020948947 (Get FASTA)   NCBI Sequence Viewer  
  XP_020948948 (Get FASTA)   NCBI Sequence Viewer  
  XP_020948949 (Get FASTA)   NCBI Sequence Viewer  
  XP_020948950 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein ADH59737 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000003935.3
  ENSSSCP00000003936.5
  ENSSSCP00000034205.3
  ENSSSCP00000055926.2
  ENSSSCP00000057743.2
  ENSSSCP00000062649.2
  ENSSSCP00000064735.1
  ENSSSCP00000073605.1
  ENSSSCP00000075585.1
  ENSSSCP00000079147.1
  ENSSSCP00005014397.1
  ENSSSCP00005015074.1
  ENSSSCP00005015209.1
  ENSSSCP00005019665.1
  ENSSSCP00005019677.1
  ENSSSCP00005019771.1
  ENSSSCP00005019785.1
  ENSSSCP00005019821.1
  ENSSSCP00015009087.1
  ENSSSCP00015012072.1
  ENSSSCP00015012376.1
  ENSSSCP00015012671.1
  ENSSSCP00025020095.1
  ENSSSCP00025020218.1
  ENSSSCP00025020341.1
  ENSSSCP00030022890.1
  ENSSSCP00030022943.1
  ENSSSCP00030023064.1
  ENSSSCP00035015497.1
  ENSSSCP00035015521.1
  ENSSSCP00035015533.1
  ENSSSCP00040039505.1
  ENSSSCP00045012059.1
  ENSSSCP00045012143.1
  ENSSSCP00045012243.1
  ENSSSCP00045012988.1
  ENSSSCP00055045311.1
  ENSSSCP00055045435.1
  ENSSSCP00055045836.1
  ENSSSCP00055046537.1
  ENSSSCP00065003718.1
  ENSSSCP00065003729.1
  ENSSSCP00065003748.1
  ENSSSCP00070046529.1
  ENSSSCP00070046535.1
  ENSSSCP00070046620.1
RefSeq Acc Id: XP_020948947   ⟸   XM_021093288
- Peptide Label: isoform X1
- UniProtKB: A0A4X1VZ32 (UniProtKB/TrEMBL),   A0A8D0J3K8 (UniProtKB/TrEMBL),   A0A8D0J385 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020948948   ⟸   XM_021093289
- Peptide Label: isoform X1
- UniProtKB: A0A4X1VZ32 (UniProtKB/TrEMBL),   A0A8D0J3K8 (UniProtKB/TrEMBL),   A0A8D0J385 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020948950   ⟸   XM_021093291
- Peptide Label: isoform X2
- UniProtKB: A0A8D0N7B4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001181903   ⟸   NM_001194974
- UniProtKB: D9YJ46 (UniProtKB/TrEMBL),   A0A8D0RQQ2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020948949   ⟸   XM_021093290
- Peptide Label: isoform X1
- UniProtKB: A0A4X1VZ32 (UniProtKB/TrEMBL),   A0A8D0J3K8 (UniProtKB/TrEMBL),   A0A8D0J385 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000079147   ⟸   ENSSSCT00000093277
RefSeq Acc Id: ENSSSCP00000057743   ⟸   ENSSSCT00000038526
RefSeq Acc Id: ENSSSCP00000073605   ⟸   ENSSSCT00000080755
RefSeq Acc Id: ENSSSCP00000064735   ⟸   ENSSSCT00000083850
RefSeq Acc Id: ENSSSCP00000055926   ⟸   ENSSSCT00000056463
RefSeq Acc Id: ENSSSCP00000003936   ⟸   ENSSSCT00000004027
RefSeq Acc Id: ENSSSCP00000003935   ⟸   ENSSSCT00000004026
RefSeq Acc Id: ENSSSCP00000034205   ⟸   ENSSSCT00000064566
RefSeq Acc Id: ENSSSCP00000075585   ⟸   ENSSSCT00000097037
RefSeq Acc Id: ENSSSCP00000062649   ⟸   ENSSSCT00000066730
Protein Domains
PAZ   Piwi


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000003630 Ensembl, UniProtKB/TrEMBL
  ENSSSCG00005014268 UniProtKB/TrEMBL
  ENSSSCG00005016598 UniProtKB/TrEMBL
  ENSSSCG00015014799 UniProtKB/TrEMBL
  ENSSSCG00015021861 UniProtKB/TrEMBL
  ENSSSCG00025034116 UniProtKB/TrEMBL
  ENSSSCG00030036039 UniProtKB/TrEMBL
  ENSSSCG00035029237 UniProtKB/TrEMBL
  ENSSSCG00040064481 UniProtKB/TrEMBL
  ENSSSCG00045007963 UniProtKB/TrEMBL
  ENSSSCG00055023592 UniProtKB/TrEMBL
  ENSSSCG00065006514 UniProtKB/TrEMBL
  ENSSSCG00070027350 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000004026.5 UniProtKB/TrEMBL
  ENSSSCT00000004027.5 UniProtKB/TrEMBL
  ENSSSCT00000038526.2 UniProtKB/TrEMBL
  ENSSSCT00000056463.2 UniProtKB/TrEMBL
  ENSSSCT00000064566.3 UniProtKB/TrEMBL
  ENSSSCT00000066730.2 UniProtKB/TrEMBL
  ENSSSCT00000080755.1 UniProtKB/TrEMBL
  ENSSSCT00000083850.1 UniProtKB/TrEMBL
  ENSSSCT00000093277.1 UniProtKB/TrEMBL
  ENSSSCT00000097037.1 UniProtKB/TrEMBL
  ENSSSCT00005023932.1 UniProtKB/TrEMBL
  ENSSSCT00005024978.1 UniProtKB/TrEMBL
  ENSSSCT00005025175.1 UniProtKB/TrEMBL
  ENSSSCT00005032286.1 UniProtKB/TrEMBL
  ENSSSCT00005032310.1 UniProtKB/TrEMBL
  ENSSSCT00005032482.1 UniProtKB/TrEMBL
  ENSSSCT00005032499.1 UniProtKB/TrEMBL
  ENSSSCT00005032554.1 UniProtKB/TrEMBL
  ENSSSCT00015023315.1 UniProtKB/TrEMBL
  ENSSSCT00015030491.1 UniProtKB/TrEMBL
  ENSSSCT00015031310.1 UniProtKB/TrEMBL
  ENSSSCT00015031937.1 UniProtKB/TrEMBL
  ENSSSCT00025046878.1 UniProtKB/TrEMBL
  ENSSSCT00025047173.1 UniProtKB/TrEMBL
  ENSSSCT00025047471.1 UniProtKB/TrEMBL
  ENSSSCT00030050332.1 UniProtKB/TrEMBL
  ENSSSCT00030050467.1 UniProtKB/TrEMBL
  ENSSSCT00030050741.1 UniProtKB/TrEMBL
  ENSSSCT00035038803.1 UniProtKB/TrEMBL
  ENSSSCT00035038847.1 UniProtKB/TrEMBL
  ENSSSCT00035038874.1 UniProtKB/TrEMBL
  ENSSSCT00040089883.1 UniProtKB/TrEMBL
  ENSSSCT00045017517.1 UniProtKB/TrEMBL
  ENSSSCT00045017639.1 UniProtKB/TrEMBL
  ENSSSCT00045017782.1 UniProtKB/TrEMBL
  ENSSSCT00045018880.1 UniProtKB/TrEMBL
  ENSSSCT00055056672.1 UniProtKB/TrEMBL
  ENSSSCT00055056810.1 UniProtKB/TrEMBL
  ENSSSCT00055057293.1 UniProtKB/TrEMBL
  ENSSSCT00055058174.1 UniProtKB/TrEMBL
  ENSSSCT00065008834.1 UniProtKB/TrEMBL
  ENSSSCT00065008867.1 UniProtKB/TrEMBL
  ENSSSCT00065008900.1 UniProtKB/TrEMBL
  ENSSSCT00070054858.1 UniProtKB/TrEMBL
  ENSSSCT00070054864.1 UniProtKB/TrEMBL
  ENSSSCT00070054960.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.420.10 UniProtKB/TrEMBL
  3.40.50.2300 UniProtKB/TrEMBL
  paz domain UniProtKB/TrEMBL
InterPro AGO3 UniProtKB/TrEMBL
  ArgoL1 UniProtKB/TrEMBL
  ArgoL2 UniProtKB/TrEMBL
  Argonaute_Mid_dom UniProtKB/TrEMBL
  Argonaute_N UniProtKB/TrEMBL
  PAZ_dom UniProtKB/TrEMBL
  PAZ_dom_sf UniProtKB/TrEMBL
  Piwi UniProtKB/TrEMBL
  Piwi_ago-like UniProtKB/TrEMBL
  RNaseH-like_sf UniProtKB/TrEMBL
  RNaseH_sf UniProtKB/TrEMBL
KEGG Report ssc:100499509 UniProtKB/TrEMBL
NCBI Gene AGO3 ENTREZGENE
PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C UniProtKB/TrEMBL
  PROTEIN ARGONAUTE-1 UniProtKB/TrEMBL
  PROTEIN ARGONAUTE-3 UniProtKB/TrEMBL
Pfam ArgoL1 UniProtKB/TrEMBL
  ArgoL2 UniProtKB/TrEMBL
  ArgoMid UniProtKB/TrEMBL
  ArgoN UniProtKB/TrEMBL
  PAZ UniProtKB/TrEMBL
  Piwi UniProtKB/TrEMBL
PROSITE PAZ UniProtKB/TrEMBL
  PIWI UniProtKB/TrEMBL
SMART DUF1785 UniProtKB/TrEMBL
  PAZ UniProtKB/TrEMBL
  Piwi UniProtKB/TrEMBL
Superfamily-SCOP SSF101690 UniProtKB/TrEMBL
  SSF53098 UniProtKB/TrEMBL
UniProt A0A286ZRU7_PIG UniProtKB/TrEMBL
  A0A4X1VWW3_PIG UniProtKB/TrEMBL
  A0A4X1VZ32 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2QL41_PIG UniProtKB/TrEMBL
  A0A5G2QWT8_PIG UniProtKB/TrEMBL
  A0A5G2RBA6_PIG UniProtKB/TrEMBL
  A0A8D0J385 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0J3K8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0J890_PIG UniProtKB/TrEMBL
  A0A8D0MTW9_PIG UniProtKB/TrEMBL
  A0A8D0MWX7_PIG UniProtKB/TrEMBL
  A0A8D0N7B4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0RQQ2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0WMU5_PIG UniProtKB/TrEMBL
  A0A8D1H176_PIG UniProtKB/TrEMBL
  A0A8D1S3N0_PIG UniProtKB/TrEMBL
  A0A8D1SWK9_PIG UniProtKB/TrEMBL
  A0A8W4FBB4_PIG UniProtKB/TrEMBL
  A0A8W4FIT7_PIG UniProtKB/TrEMBL
  D9YJ46 ENTREZGENE, UniProtKB/TrEMBL
  F1SV62_PIG UniProtKB/TrEMBL
UniProt Secondary A0A287BIG0 UniProtKB/TrEMBL
  A0A287BNJ6 UniProtKB/TrEMBL
  F1SV63 UniProtKB/TrEMBL