PIWIL3 (piwi like RNA-mediated gene silencing 3) - Rat Genome Database

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Gene: PIWIL3 (piwi like RNA-mediated gene silencing 3) Sus scrofa
Analyze
Symbol: PIWIL3
Name: piwi like RNA-mediated gene silencing 3 (Ensembl:piwi like RNA-mediated silencing 3)
RGD ID: 14135426
Description: ENCODES a protein that exhibits nucleic acid binding (inferred); piRNA binding (inferred); RNA binding (inferred); INVOLVED IN regulation of translation (inferred); regulatory ncRNA-mediated gene silencing (inferred); ASSOCIATED WITH genetic disease (ortholog); oligospermia (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); INTERACTS WITH resveratrol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: piwi-like 3; piwi-like protein 3
RGD Orthologs
Human
Bonobo
Dog
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1442,835,302 - 42,869,566 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11442,834,819 - 42,869,486 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21445,566,922 - 45,600,516 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
resveratrol  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (ISO)
nucleus  (ISO)
P granule  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
PIWIL3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1442,835,302 - 42,869,566 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11442,834,819 - 42,869,486 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21445,566,922 - 45,600,516 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PIWIL3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382224,719,034 - 24,774,720 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2224,719,034 - 24,774,720 (-)EnsemblGRCh38hg38GRCh38
GRCh372225,115,001 - 25,170,687 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362223,445,001 - 23,500,683 (-)NCBINCBI36Build 36hg18NCBI36
Build 342223,439,554 - 23,495,237NCBI
Celera228,919,401 - 8,975,139 (-)NCBICelera
Cytogenetic Map22q11.23NCBI
HuRef228,063,447 - 8,119,140 (-)NCBIHuRef
CHM1_12225,073,992 - 25,129,703 (-)NCBICHM1_1
T2T-CHM13v2.02225,180,480 - 25,236,180 (-)NCBIT2T-CHM13v2.0
PIWIL3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22334,622,587 - 34,705,478 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12237,320,755 - 37,403,651 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0225,678,784 - 5,721,948 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12223,347,633 - 23,390,380 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2223,347,633 - 23,390,380 (-)Ensemblpanpan1.1panPan2
LOC486307
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12617,035,530 - 17,063,177 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2617,036,963 - 17,061,992 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2618,739,185 - 18,766,762 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02617,379,223 - 17,407,390 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2617,380,903 - 17,406,205 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12618,948,385 - 18,974,803 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02617,369,622 - 17,397,271 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02617,387,029 - 17,414,680 (-)NCBIUU_Cfam_GSD_1.0
PIWIL3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1197,826,068 - 7,866,064 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl197,826,757 - 7,865,934 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045118,012,577 - 118,068,691 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Piwil3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474712,587,798 - 12,629,494 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PIWIL3
825 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system nervous system
High
Medium
Low 1 3
Below cutoff 1 5

Sequence


RefSeq Acc Id: ENSSSCT00000010902   ⟹   ENSSSCP00000010617
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1442,835,302 - 42,866,184 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000094386   ⟹   ENSSSCP00000075050
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1442,835,302 - 42,869,566 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000098658   ⟹   ENSSSCP00000077175
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1442,835,302 - 42,869,566 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000100413   ⟹   ENSSSCP00000080348
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1442,835,302 - 42,869,566 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000105754   ⟹   ENSSSCP00000077872
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1442,835,302 - 42,869,566 (-)Ensembl
RefSeq Acc Id: XM_021073159   ⟹   XP_020928818
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11442,834,819 - 42,869,485 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021073160   ⟹   XP_020928819
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11442,834,819 - 42,869,486 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021073162   ⟹   XP_020928821
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11442,834,820 - 42,869,484 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020928819   ⟸   XM_021073160
- Peptide Label: isoform X1
- UniProtKB: A0A4X1SML5 (UniProtKB/TrEMBL),   A0A8W4FEY3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020928818   ⟸   XM_021073159
- Peptide Label: isoform X1
- UniProtKB: A0A4X1SML5 (UniProtKB/TrEMBL),   A0A8W4FEY3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020928821   ⟸   XM_021073162
- Peptide Label: isoform X2
- UniProtKB: A0A4X1SML5 (UniProtKB/TrEMBL),   A0A8W4FEY3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000075050   ⟸   ENSSSCT00000094386
RefSeq Acc Id: ENSSSCP00000077872   ⟸   ENSSSCT00000105754
RefSeq Acc Id: ENSSSCP00000010617   ⟸   ENSSSCT00000010902
RefSeq Acc Id: ENSSSCP00000080348   ⟸   ENSSSCT00000100413
RefSeq Acc Id: ENSSSCP00000077175   ⟸   ENSSSCT00000098658
Protein Domains
PAZ   Piwi


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000009950 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005045446 UniProtKB/TrEMBL
  ENSSSCG00070002322 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000010902 ENTREZGENE
  ENSSSCT00000010902.5 UniProtKB/TrEMBL
  ENSSSCT00000094386.1 UniProtKB/TrEMBL
  ENSSSCT00000098658.1 UniProtKB/TrEMBL
  ENSSSCT00000100413.1 UniProtKB/TrEMBL
  ENSSSCT00000105754 ENTREZGENE
  ENSSSCT00000105754.1 UniProtKB/TrEMBL
  ENSSSCT00005073505.1 UniProtKB/TrEMBL
  ENSSSCT00070004552.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.420.10 UniProtKB/TrEMBL
  3.40.50.2300 UniProtKB/TrEMBL
  paz domain UniProtKB/TrEMBL
InterPro PAZ_dom UniProtKB/TrEMBL
  PAZ_dom_sf UniProtKB/TrEMBL
  Piwi UniProtKB/TrEMBL
  RNaseH-like_sf UniProtKB/TrEMBL
  RNaseH_sf UniProtKB/TrEMBL
NCBI Gene PIWIL3 ENTREZGENE
PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C UniProtKB/TrEMBL
  PIWI-LIKE PROTEIN 3 UniProtKB/TrEMBL
Pfam PAZ UniProtKB/TrEMBL
  Piwi UniProtKB/TrEMBL
PROSITE PAZ UniProtKB/TrEMBL
  PIWI UniProtKB/TrEMBL
SMART PAZ UniProtKB/TrEMBL
  Piwi UniProtKB/TrEMBL
Superfamily-SCOP SSF101690 UniProtKB/TrEMBL
  SSF53098 UniProtKB/TrEMBL
UniProt A0A4X1SML5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0QPE3_PIG UniProtKB/TrEMBL
  A0A8W4F8B2_PIG UniProtKB/TrEMBL
  A0A8W4FE90_PIG UniProtKB/TrEMBL
  A0A8W4FEY3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FN79_PIG UniProtKB/TrEMBL
UniProt Secondary F1RGA4 UniProtKB/TrEMBL
VGNC ID VGNC:98199 ENTREZGENE