PDCD6IP (programmed cell death 6 interacting protein) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: PDCD6IP (programmed cell death 6 interacting protein) Sus scrofa
Analyze
Symbol: PDCD6IP
Name: programmed cell death 6 interacting protein
RGD ID: 14134841
Description: ENCODES a protein that exhibits calcium-dependent protein binding (ortholog); identical protein binding (ortholog); protein dimerization activity (ortholog); INVOLVED IN actomyosin contractile ring assembly (ortholog); bicellular tight junction assembly (ortholog); maintenance of epithelial cell apical/basal polarity (ortholog); ASSOCIATED WITH osteoarthritis (ortholog); FOUND IN actomyosin (ortholog); cytoplasm (ortholog); cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: programmed cell death 6-interacting protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1319,597,108 - 19,698,270 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11319,597,064 - 19,664,047 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21321,193,109 - 21,243,506 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:14681463  


Genomics

Comparative Map Data
PDCD6IP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1319,597,108 - 19,698,270 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11319,597,064 - 19,664,047 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21321,193,109 - 21,243,506 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PDCD6IP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl333,798,571 - 33,869,707 (+)EnsemblGRCh38hg38GRCh38
GRCh38333,798,630 - 33,869,703 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37333,840,122 - 33,911,195 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36333,814,561 - 33,886,198 (+)NCBINCBI36hg18NCBI36
Build 34333,814,560 - 33,886,198NCBI
Celera333,783,127 - 33,854,073 (+)NCBI
Cytogenetic Map3p22.3NCBI
HuRef333,781,264 - 33,852,387 (+)NCBIHuRef
CHM1_1333,789,988 - 33,861,201 (+)NCBICHM1_1
Pdcd6ip
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399113,480,812 - 113,537,457 (-)NCBIGRCm39mm39
GRCm39 Ensembl9113,480,812 - 113,537,327 (-)Ensembl
GRCm389113,651,744 - 113,708,279 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9113,651,744 - 113,708,259 (-)EnsemblGRCm38mm10GRCm38
MGSCv379113,560,862 - 113,617,377 (-)NCBIGRCm37mm9NCBIm37
MGSCv369113,503,631 - 113,556,805 (-)NCBImm8
Celera9113,360,961 - 113,417,417 (-)NCBICelera
Cytogenetic Map9F3NCBI
Pdcd6ip
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.28113,590,998 - 113,646,795 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl8113,590,998 - 113,646,773 (-)Ensembl
Rnor_6.08121,916,233 - 121,973,145 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8121,916,185 - 121,973,125 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08121,231,793 - 121,287,105 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48118,314,910 - 118,350,134 (-)NCBIRGSC3.4rn4RGSC3.4
Celera8112,840,809 - 112,895,775 (-)NCBICelera
Cytogenetic Map8q32NCBI
Pdcd6ip
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554211,034,843 - 1,110,438 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554211,034,843 - 1,109,637 (+)NCBIChiLan1.0ChiLan1.0
PDCD6IP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1334,016,152 - 34,093,631 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl334,016,474 - 34,093,631 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0333,719,603 - 33,793,301 (+)NCBIMhudiblu_PPA_v0panPan3
PDCD6IP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1234,112,299 - 4,199,230 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl234,112,363 - 4,196,342 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha234,154,337 - 4,240,985 (+)NCBI
ROS_Cfam_1.0234,374,570 - 4,462,420 (+)NCBI
UMICH_Zoey_3.1234,207,505 - 4,294,589 (+)NCBI
UNSW_CanFamBas_1.0234,339,176 - 4,426,011 (+)NCBI
UU_Cfam_GSD_1.0234,308,530 - 4,395,465 (+)NCBI
LOC101964793
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118190,870,278 - 190,948,263 (+)NCBI
SpeTri2.0NW_00493647324,010,942 - 24,086,836 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC103241851
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11578,265,099 - 78,339,307 (+)NCBIChlSab1.1chlSab2
ChlSab1.11578,265,099 - 78,339,307 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1578,265,252 - 78,339,873 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604151,646,595 - 51,721,427 (+)NCBIVero_WHO_p1.0
Pdcd6ip
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478811,772,268 - 11,849,040 (+)NCBIHetGla_female_1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 2 3 5 2 23 2 3 3
Low 2
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000012304   ⟹   ENSSSCP00000011985
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1319,597,168 - 19,661,164 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000043902   ⟹   ENSSSCP00000035657
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1319,597,108 - 19,661,161 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000049951   ⟹   ENSSSCP00000039055
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1319,597,126 - 19,698,270 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000057076   ⟹   ENSSSCP00000043173
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1319,597,141 - 19,664,043 (+)Ensembl
RefSeq Acc Id: XM_021071621   ⟹   XP_020927280
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11319,597,100 - 19,664,047 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021071622   ⟹   XP_020927281
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11319,597,064 - 19,664,047 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020927280 (Get FASTA)   NCBI Sequence Viewer  
  XP_020927281 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_020927281   ⟸   XM_021071622
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_020927280   ⟸   XM_021071621
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSSSCP00000043173   ⟸   ENSSSCT00000057076
RefSeq Acc Id: ENSSSCP00000035657   ⟸   ENSSSCT00000043902
RefSeq Acc Id: ENSSSCP00000039055   ⟸   ENSSSCT00000049951
RefSeq Acc Id: ENSSSCP00000011985   ⟸   ENSSSCT00000012304
Protein Domains
BRO1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000011237 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070014992 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000011985 UniProtKB/TrEMBL
  ENSSSCP00000035657 UniProtKB/TrEMBL
  ENSSSCP00000039055 UniProtKB/TrEMBL
  ENSSSCP00000043173 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00070024664 UniProtKB/TrEMBL
  ENSSSCP00070024718 UniProtKB/TrEMBL
  ENSSSCP00070024731 UniProtKB/TrEMBL
  ENSSSCP00070024760 UniProtKB/TrEMBL
  ENSSSCP00070024775 UniProtKB/TrEMBL
  ENSSSCP00070024790 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000012304 UniProtKB/TrEMBL
  ENSSSCT00000043902 UniProtKB/TrEMBL
  ENSSSCT00000049951 UniProtKB/TrEMBL
  ENSSSCT00000057076 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00070029582 UniProtKB/TrEMBL
  ENSSSCT00070029642 UniProtKB/TrEMBL
  ENSSSCT00070029655 UniProtKB/TrEMBL
  ENSSSCT00070029689 UniProtKB/TrEMBL
  ENSSSCT00070029704 UniProtKB/TrEMBL
  ENSSSCT00070029722 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.280 UniProtKB/TrEMBL
InterPro ALIX_V_dom UniProtKB/TrEMBL
  BRO1_dom UniProtKB/TrEMBL
  BRO1_sf UniProtKB/TrEMBL
NCBI Gene PDCD6IP ENTREZGENE
Pfam ALIX_LYPXL_bnd UniProtKB/TrEMBL
  BRO1 UniProtKB/TrEMBL
PROSITE BRO1 UniProtKB/TrEMBL
SMART BRO1 UniProtKB/TrEMBL
UniProt A0A287A5B4_PIG UniProtKB/TrEMBL
  A0A287AH24_PIG UniProtKB/TrEMBL
  A0A287ANX4_PIG UniProtKB/TrEMBL
  A0A4X1U4U5_PIG UniProtKB/TrEMBL
  A0A4X1U4Y6_PIG UniProtKB/TrEMBL
  A0A4X1U503_PIG UniProtKB/TrEMBL
  A0A4X1U723_PIG UniProtKB/TrEMBL
  A0A4X1U990_PIG UniProtKB/TrEMBL
  A0A4X1U9Z6_PIG UniProtKB/TrEMBL
  F1RRD6_PIG UniProtKB/TrEMBL
VGNC ID VGNC:106452 ENTREZGENE