CCR3 (C-C motif chemokine receptor 3) - Rat Genome Database

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Gene: CCR3 (C-C motif chemokine receptor 3) Sus scrofa
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Symbol: CCR3
Name: C-C motif chemokine receptor 3
RGD ID: 14134096
Description: ENCODES a protein that exhibits C-C chemokine receptor activity (inferred); INVOLVED IN angioblast cell migration (ortholog); chemotaxis (ortholog); eosinophil chemotaxis (ortholog); ASSOCIATED WITH allergic conjunctivitis (ortholog); allergic contact dermatitis (ortholog); Animal Mammary Neoplasms (ortholog); FOUND IN endosome (ortholog); extracellular space (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: C-C chemokine receptor type 3; chemokine C-C motif receptor 3; probable C-C chemokine receptor type 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1329,251,959 - 29,376,346 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11329,251,950 - 29,286,470 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21332,348,402 - 32,450,254 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:15777643  


Genomics

Comparative Map Data
CCR3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1329,251,959 - 29,376,346 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11329,251,950 - 29,286,470 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21332,348,402 - 32,450,254 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CCR3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl346,130,890 - 46,266,706 (+)EnsemblGRCh38hg38GRCh38
GRCh38346,210,699 - 46,266,706 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37346,283,872 - 46,308,197 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36346,258,692 - 46,283,166 (+)NCBINCBI36hg18NCBI36
Build 34346,258,691 - 46,283,166NCBI
Celera346,221,217 - 46,245,543 (+)NCBI
Cytogenetic Map3p21.31NCBI
HuRef346,327,575 - 46,351,905 (+)NCBIHuRef
CHM1_1346,233,878 - 46,258,185 (+)NCBICHM1_1
Ccr3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399123,817,799 - 123,831,729 (+)NCBIGRCm39mm39
GRCm39 Ensembl9123,822,009 - 123,831,726 (+)Ensembl
GRCm389124,017,825 - 124,031,692 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9124,021,972 - 124,031,689 (+)EnsemblGRCm38mm10GRCm38
MGSCv379123,936,703 - 123,946,421 (+)NCBIGRCm37mm9NCBIm37
MGSCv369123,870,898 - 123,879,738 (+)NCBImm8
Celera9124,968,286 - 124,978,018 (-)NCBICelera
Cytogenetic Map9F4NCBI
cM Map975.05NCBI
Ccr3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.28123,586,100 - 123,634,178 (+)NCBI
Rnor_6.0 Ensembl8133,029,625 - 133,040,997 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.08133,026,539 - 133,040,999 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.08132,180,887 - 132,190,686 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48128,759,943 - 128,769,341 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.18128,779,679 - 128,789,067 (+)NCBI
Celera8122,724,521 - 122,733,919 (+)NCBICelera
Cytogenetic Map8q32NCBI
Ccr3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542025,701,407 - 25,723,353 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542025,702,917 - 25,723,269 (-)NCBIChiLan1.0ChiLan1.0
CCR3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1347,253,878 - 47,278,630 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl347,253,878 - 47,278,630 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0346,147,928 - 46,172,947 (+)NCBIMhudiblu_PPA_v0panPan3
CCR3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12042,382,380 - 42,398,449 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2042,383,135 - 42,384,217 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2042,299,062 - 42,300,141 (-)NCBI
ROS_Cfam_1.02042,864,741 - 42,903,643 (-)NCBI
UMICH_Zoey_3.12042,106,665 - 42,107,744 (-)NCBI
UNSW_CanFamBas_1.02042,508,009 - 42,509,088 (-)NCBI
UU_Cfam_GSD_1.02042,789,121 - 42,790,200 (-)NCBI
Ccr3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118200,674,516 - 200,675,950 (+)NCBI
SpeTri2.0NW_004936596223,660 - 224,739 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCR3
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1227,648,410 - 7,698,523 (+)NCBI
ChlSab1.1 Ensembl227,697,068 - 7,698,135 (+)Ensembl
Vero_WHO_p1.0NW_023666041159,459,370 - 159,477,790 (-)NCBI
Ccr3
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473074,768,668 - 74,769,749 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 3 2 4 2
Low 7 2 3 1 2 13 2 3 1
Below cutoff 8

Sequence


Reference Sequences
RefSeq Acc Id: NM_001001620   ⟹   NP_001001620
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11329,251,960 - 29,286,467 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013981570   ⟹   XP_013837024
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11329,251,950 - 29,286,470 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021068579   ⟹   XP_020924238
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11329,267,047 - 29,286,470 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_013837024   ⟸   XM_013981570
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001001620   ⟸   NM_001001620
- UniProtKB: Q75ZH4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020924238   ⟸   XM_021068579
- Peptide Label: isoform X1
- Sequence:
Protein Domains
G_PROTEIN_RECEP_F1_2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000024311 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070007520 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000022129 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000027606 UniProtKB/TrEMBL
  ENSSSCP00070011979 UniProtKB/TrEMBL
  ENSSSCP00070011981 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000022709 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000030755 UniProtKB/TrEMBL
  ENSSSCT00070014509 UniProtKB/TrEMBL
  ENSSSCT00070014511 UniProtKB/TrEMBL
InterPro Chemokine_CCR3 UniProtKB/TrEMBL
  Chemokine_rcpt UniProtKB/TrEMBL
  GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
KEGG Report ssc:414373 UniProtKB/TrEMBL
NCBI Gene CCR3 ENTREZGENE
Pfam 7tm_1 UniProtKB/TrEMBL
PRINTS CCCHEMOKINER UniProtKB/TrEMBL
  CHEMOKINER3 UniProtKB/TrEMBL
  GPCRRHODOPSN UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
SMART 7TM_GPCR_Srsx UniProtKB/TrEMBL
UniProt A0A4X1T9A7_PIG UniProtKB/TrEMBL
  A0A5K1U6D8_PIG UniProtKB/TrEMBL
  Q6YST6_PIG UniProtKB/TrEMBL
  Q75ZH4 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary I3LDJ7 UniProtKB/TrEMBL
  I3LU07 UniProtKB/TrEMBL