B4GALT5 (beta-1,4-galactosyltransferase 5) - Rat Genome Database

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Gene: B4GALT5 (beta-1,4-galactosyltransferase 5) Sus scrofa
Analyze
Symbol: B4GALT5
Name: beta-1,4-galactosyltransferase 5
RGD ID: 14133999
Description: ENCODES a protein that exhibits UDP-galactose:glucosylceramide beta-1,4-galactosyltransferase activity (ortholog); INVOLVED IN glycosylation; central nervous system myelination (ortholog); central nervous system neuron axonogenesis (ortholog); ASSOCIATED WITH COVID-19 (ortholog); Experimental Liver Cirrhosis (ortholog); juvenile rheumatoid arthritis (ortholog); FOUND IN Golgi apparatus
Type: protein-coding
RefSeq Status: MODEL
Also known as: b4Gal-T5; beta-1,4-galactosyltransferase V; Beta-1,4-GalT II; Beta-1,4-GalTase 5; Beta4Gal-T5; Glucosylceramide beta-1,4-galactosyltransferase; LacCer synthase; Lactosylceramide synthase; UDP-Gal:beta-GlcNAc beta-1,4-galactosyltransferase 5; UDP-galactose:beta-N-acetylglucosamine beta-1,4-galactosyltransferase 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1751,259,786 - 51,356,803 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11751,257,273 - 51,334,566 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21757,578,640 - 57,655,502 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:14681463   PMID:29546034  


Genomics

Comparative Map Data
B4GALT5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1751,259,786 - 51,356,803 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11751,257,273 - 51,334,566 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21757,578,640 - 57,655,502 (-)NCBISscrofa10.2Sscrofa10.2susScr3
B4GALT5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2049,632,945 - 49,713,878 (-)EnsemblGRCh38hg38GRCh38
GRCh382049,632,945 - 49,713,878 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh372048,249,482 - 48,330,415 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362047,682,889 - 47,763,745 (-)NCBINCBI36hg18NCBI36
Build 342047,682,888 - 47,763,745NCBI
Celera2044,954,098 - 45,035,021 (-)NCBI
Cytogenetic Map20q13.13NCBI
HuRef2044,998,184 - 45,021,953 (-)NCBIHuRef
CHM1_12048,154,191 - 48,235,100 (-)NCBICHM1_1
B4galt5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392167,140,364 - 167,191,155 (-)NCBIGRCm39mm39
GRCm39 Ensembl2167,140,364 - 167,191,103 (-)Ensembl
GRCm382167,298,444 - 167,349,178 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2167,298,444 - 167,349,183 (-)EnsemblGRCm38mm10GRCm38
MGSCv372167,123,944 - 167,174,678 (-)NCBIGRCm37mm9NCBIm37
MGSCv362166,992,266 - 167,040,388 (-)NCBImm8
Celera2173,239,050 - 173,289,822 (-)NCBICelera
Cytogenetic Map2H3NCBI
B4galt5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23156,018,056 - 156,033,983 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl3156,018,053 - 156,070,074 (-)Ensembl
Rnor_6.03164,039,731 - 164,055,561 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3164,039,731 - 164,095,878 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03170,196,325 - 170,211,612 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43158,440,189 - 158,449,419 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13158,349,006 - 158,397,606 (-)NCBI
Celera3154,599,548 - 154,615,476 (-)NCBICelera
Cytogenetic Map3q42NCBI
B4galt5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554458,534,220 - 8,559,672 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554458,471,684 - 8,559,672 (+)NCBIChiLan1.0ChiLan1.0
B4GALT5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12047,042,479 - 47,123,209 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2047,041,469 - 47,123,214 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02045,977,801 - 46,058,429 (-)NCBIMhudiblu_PPA_v0panPan3
B4GALT5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12436,220,973 - 36,241,482 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2436,221,189 - 36,300,804 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2435,462,952 - 35,538,860 (-)NCBI
ROS_Cfam_1.02436,925,343 - 37,001,298 (-)NCBI
UMICH_Zoey_3.12436,166,534 - 36,242,395 (-)NCBI
UNSW_CanFamBas_1.02436,303,207 - 36,376,262 (-)NCBI
UU_Cfam_GSD_1.02436,842,820 - 36,918,775 (-)NCBI
B4galt5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640189,221,713 - 189,282,986 (+)NCBI
SpeTri2.0NW_0049365144,719,198 - 4,736,638 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
B4GALT5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1214,270,945 - 14,357,052 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl214,271,141 - 14,354,159 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605062,756,661 - 62,840,309 (+)NCBIVero_WHO_p1.0
B4galt5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247905,770,586 - 5,792,036 (+)NCBIHetGla_female_1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 2 4 18 2 3
Low 2 3 1 2 5 2 1
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000008169   ⟹   ENSSSCP00000007952
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1751,259,786 - 51,334,026 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000040833   ⟹   ENSSSCP00000051682
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1751,259,786 - 51,356,803 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000072055   ⟹   ENSSSCP00000071371
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1751,259,811 - 51,288,995 (-)Ensembl
RefSeq Acc Id: XM_003134490   ⟹   XP_003134538
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11751,257,273 - 51,334,566 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002340099
RefSeq Status:
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11751,257,273 - 51,334,566 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003134538 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein A0A1S6M251 (Get FASTA)   NCBI Sequence Viewer  
  AQU14360 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003134538   ⟸   XM_003134490
- Sequence:
RefSeq Acc Id: ENSSSCP00000051682   ⟸   ENSSSCT00000040833
RefSeq Acc Id: ENSSSCP00000071371   ⟸   ENSSSCT00000072055
RefSeq Acc Id: ENSSSCP00000007952   ⟸   ENSSSCT00000008169
Protein Domains
Glyco_transf_7C   Glyco_transf_7N


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000007465 Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00025076572 UniProtKB/Swiss-Prot
  ENSSSCG00035025847 UniProtKB/Swiss-Prot
  ENSSSCG00045003733 UniProtKB/Swiss-Prot
  ENSSSCG00055025271 UniProtKB/Swiss-Prot
  ENSSSCG00070017416 UniProtKB/Swiss-Prot
Ensembl Protein ENSSSCP00000007952 UniProtKB/Swiss-Prot
  ENSSSCP00000051682 UniProtKB/TrEMBL
  ENSSSCP00000071371 UniProtKB/TrEMBL
  ENSSSCP00025047608 UniProtKB/Swiss-Prot
  ENSSSCP00035013457 UniProtKB/Swiss-Prot
  ENSSSCP00045004194 UniProtKB/Swiss-Prot
  ENSSSCP00055039991 UniProtKB/Swiss-Prot
  ENSSSCP00070028732 UniProtKB/Swiss-Prot
Ensembl Transcript ENSSSCT00000008169 UniProtKB/Swiss-Prot
  ENSSSCT00000040833 UniProtKB/TrEMBL
  ENSSSCT00000072055 UniProtKB/TrEMBL
  ENSSSCT00025106169 UniProtKB/Swiss-Prot
  ENSSSCT00035034067 UniProtKB/Swiss-Prot
  ENSSSCT00045006200 UniProtKB/Swiss-Prot
  ENSSSCT00055050054 UniProtKB/Swiss-Prot
  ENSSSCT00070034393 UniProtKB/Swiss-Prot
Gene3D-CATH 3.90.550.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Galactosyl_T UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Galactosyl_T_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Galactosyl_T_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report ssc:100522653 UniProtKB/Swiss-Prot
NCBI Gene B4GALT5 ENTREZGENE
PANTHER PTHR19300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Glyco_transf_7C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Glyco_transf_7N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS B14GALTRFASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF53448 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1S6M251 ENTREZGENE
  A0A5G2R2F6_PIG UniProtKB/TrEMBL
  A0A5S8MJ01_PIG UniProtKB/TrEMBL
  B4GT5_PIG UniProtKB/Swiss-Prot
UniProt Secondary A0A287B5B9 UniProtKB/Swiss-Prot
VGNC ID VGNC:96499 ENTREZGENE