GALNT10 (polypeptide N-acetylgalactosaminyltransferase 10) - Rat Genome Database

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Gene: GALNT10 (polypeptide N-acetylgalactosaminyltransferase 10) Sus scrofa
Analyze
Symbol: GALNT10
Name: polypeptide N-acetylgalactosaminyltransferase 10
RGD ID: 14131580
Description: ENCODES a protein that exhibits carbohydrate binding (inferred); glycosyltransferase activity (inferred); polypeptide N-acetylgalactosaminyltransferase activity (inferred); INVOLVED IN protein O-linked glycosylation (ortholog); ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); genetic disease (ortholog); Hereditary Neoplastic Syndromes (ortholog); FOUND IN Golgi apparatus (inferred); Golgi membrane (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10 (GalNAc-T10)
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1668,723,995 - 68,961,326 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11668,723,993 - 69,032,759 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21674,632,993 - 74,817,743 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
Golgi apparatus  (IBA,IEA)
Golgi membrane  (IEA)
membrane  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
GALNT10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1668,723,995 - 68,961,326 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11668,723,993 - 69,032,759 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21674,632,993 - 74,817,743 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GALNT10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385154,190,733 - 154,420,984 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5154,190,730 - 154,420,984 (+)EnsemblGRCh38hg38GRCh38
GRCh375153,570,293 - 153,800,544 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365153,550,488 - 153,780,003 (+)NCBINCBI36Build 36hg18NCBI36
Build 345153,550,487 - 153,780,003NCBI
Celera5149,750,055 - 149,876,200 (+)NCBICelera
Cytogenetic Map5q33.2NCBI
HuRef5148,711,113 - 148,941,366 (+)NCBIHuRef
CHM1_15153,003,035 - 153,233,166 (+)NCBICHM1_1
T2T-CHM13v2.05154,723,701 - 154,954,912 (+)NCBIT2T-CHM13v2.0
Galnt10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391157,536,268 - 57,678,327 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1157,536,268 - 57,678,340 (+)EnsemblGRCm39 Ensembl
GRCm381157,645,442 - 57,787,514 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1157,645,442 - 57,787,514 (+)EnsemblGRCm38mm10GRCm38
MGSCv371157,458,944 - 57,601,003 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361157,461,637 - 57,603,696 (+)NCBIMGSCv36mm8
Celera1162,398,045 - 62,539,186 (+)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1135.27NCBI
Galnt10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81042,321,691 - 42,468,087 (+)NCBIGRCr8
mRatBN7.21041,821,216 - 41,967,618 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1041,820,158 - 41,967,013 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1046,484,468 - 46,627,402 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01045,974,720 - 46,117,663 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01041,478,345 - 41,621,282 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01043,067,316 - 43,208,992 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1043,067,299 - 43,210,427 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01042,867,364 - 43,008,297 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41043,237,411 - 43,381,584 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11043,251,033 - 43,395,207 (+)NCBI
Celera1041,116,176 - 41,257,585 (+)NCBICelera
Cytogenetic Map10q22NCBI
Galnt10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554088,578,725 - 8,800,800 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554088,578,725 - 8,804,562 (+)NCBIChiLan1.0ChiLan1.0
GALNT10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24149,396,891 - 149,628,220 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15147,536,436 - 147,767,765 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05149,497,998 - 149,822,999 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15155,438,451 - 155,821,214 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5155,548,799 - 155,821,214 (+)Ensemblpanpan1.1panPan2
GALNT10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1455,275,008 - 55,491,619 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl455,277,883 - 55,491,499 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha455,166,269 - 55,382,706 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0455,709,568 - 55,926,011 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl455,711,429 - 55,926,225 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1455,539,909 - 55,756,240 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0455,638,401 - 55,854,902 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0456,140,974 - 56,357,479 (-)NCBIUU_Cfam_GSD_1.0
Galnt10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213109,897,105 - 110,137,710 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365158,350,258 - 8,483,437 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365158,346,450 - 8,391,351 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GALNT10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12356,648,235 - 56,878,343 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2356,648,404 - 56,878,331 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603420,785,425 - 21,015,525 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Galnt10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473334,772,657 - 34,988,140 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473334,772,657 - 34,988,093 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in GALNT10
11430 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 6 2
Low 10 4 3 4 2 17 2 3 1
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000018588   ⟹   ENSSSCP00000018088
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1668,723,995 - 68,961,326 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000042855   ⟹   ENSSSCP00000054553
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1668,723,995 - 68,961,326 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000065994   ⟹   ENSSSCP00000041497
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1668,723,995 - 68,961,287 (-)Ensembl
RefSeq Acc Id: XM_021076942   ⟹   XP_020932601
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11668,723,993 - 68,961,256 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021076943   ⟹   XP_020932602
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11668,726,251 - 69,032,759 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021076944   ⟹   XP_020932603
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11668,726,251 - 69,006,177 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021076945   ⟹   XP_020932604
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11668,726,251 - 69,006,177 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021076946   ⟹   XP_020932605
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11668,726,251 - 69,032,759 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020932601   ⟸   XM_021076942
- Peptide Label: isoform X1
- UniProtKB: K9IVH1 (UniProtKB/TrEMBL),   F1RQC2 (UniProtKB/TrEMBL),   A0A4X1TT34 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020932602   ⟸   XM_021076943
- Peptide Label: isoform X2
- UniProtKB: A0A5K1U5L7 (UniProtKB/TrEMBL),   A0A8D1EP39 (UniProtKB/TrEMBL),   A0A4X1TQX3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020932605   ⟸   XM_021076946
- Peptide Label: isoform X2
- UniProtKB: A0A5K1U5L7 (UniProtKB/TrEMBL),   A0A8D1EP39 (UniProtKB/TrEMBL),   A0A4X1TQX3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020932604   ⟸   XM_021076945
- Peptide Label: isoform X2
- UniProtKB: A0A5K1U5L7 (UniProtKB/TrEMBL),   A0A8D1EP39 (UniProtKB/TrEMBL),   A0A4X1TQX3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020932603   ⟸   XM_021076944
- Peptide Label: isoform X2
- UniProtKB: A0A5K1U5L7 (UniProtKB/TrEMBL),   A0A8D1EP39 (UniProtKB/TrEMBL),   A0A4X1TQX3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000041497   ⟸   ENSSSCT00000065994
RefSeq Acc Id: ENSSSCP00000054553   ⟸   ENSSSCT00000042855
RefSeq Acc Id: ENSSSCP00000018088   ⟸   ENSSSCT00000018588

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000017072 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025061493 UniProtKB/TrEMBL
  ENSSSCG00030030768 UniProtKB/TrEMBL
  ENSSSCG00035015514 UniProtKB/TrEMBL
  ENSSSCG00040042108 UniProtKB/TrEMBL
  ENSSSCG00045007968 UniProtKB/TrEMBL
  ENSSSCG00050019231 UniProtKB/TrEMBL
  ENSSSCG00055027751 UniProtKB/TrEMBL
  ENSSSCG00065010833 UniProtKB/TrEMBL
  ENSSSCG00070012066 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000018588 ENTREZGENE
  ENSSSCT00000018588.5 UniProtKB/TrEMBL
  ENSSSCT00000042855.3 UniProtKB/TrEMBL
  ENSSSCT00025084190.1 UniProtKB/TrEMBL
  ENSSSCT00030042896.1 UniProtKB/TrEMBL
  ENSSSCT00030042929.1 UniProtKB/TrEMBL
  ENSSSCT00030042954.1 UniProtKB/TrEMBL
  ENSSSCT00035019766.1 UniProtKB/TrEMBL
  ENSSSCT00035019771.1 UniProtKB/TrEMBL
  ENSSSCT00040056380.1 UniProtKB/TrEMBL
  ENSSSCT00045013406.1 UniProtKB/TrEMBL
  ENSSSCT00045013479.1 UniProtKB/TrEMBL
  ENSSSCT00050025965.1 UniProtKB/TrEMBL
  ENSSSCT00055055277.1 UniProtKB/TrEMBL
  ENSSSCT00055055345.1 UniProtKB/TrEMBL
  ENSSSCT00055055405.1 UniProtKB/TrEMBL
  ENSSSCT00065014395.1 UniProtKB/TrEMBL
  ENSSSCT00070023580.1 UniProtKB/TrEMBL
  ENSSSCT00070023597.1 UniProtKB/TrEMBL
  ENSSSCT00070023613.1 UniProtKB/TrEMBL
  ENSSSCT00070023618.1 UniProtKB/TrEMBL
  ENSSSCT00070023624.1 UniProtKB/TrEMBL
  ENSSSCT00070023628.1 UniProtKB/TrEMBL
  ENSSSCT00070023647.1 UniProtKB/TrEMBL
Gene3D-CATH 2.80.10.50 UniProtKB/TrEMBL
InterPro Galactosyl_T_C UniProtKB/TrEMBL
  GalNAc-T UniProtKB/TrEMBL
  Glyco_trans_2-like UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/TrEMBL
  Ricin_B-like_lectins UniProtKB/TrEMBL
  Ricin_B_lectin UniProtKB/TrEMBL
NCBI Gene GALNT10 ENTREZGENE
PANTHER N-ACETYLGALACTOSAMINYLTRANSFERASE UniProtKB/TrEMBL
  POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE 10 UniProtKB/TrEMBL
Pfam Glyco_transf_7C UniProtKB/TrEMBL
  Glycos_transf_2 UniProtKB/TrEMBL
  Ricin_B_lectin UniProtKB/TrEMBL
PROSITE RICIN_B_LECTIN UniProtKB/TrEMBL
SMART RICIN UniProtKB/TrEMBL
Superfamily-SCOP SSF50370 UniProtKB/TrEMBL
  SSF53448 UniProtKB/TrEMBL
UniProt A0A287BEL4_PIG UniProtKB/TrEMBL
  A0A4X1TQX3 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TT17_PIG UniProtKB/TrEMBL
  A0A4X1TT34 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TT39_PIG UniProtKB/TrEMBL
  A0A4X1TW52_PIG UniProtKB/TrEMBL
  A0A4X1TWA3_PIG UniProtKB/TrEMBL
  A0A5K1U5L7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0WDC0_PIG UniProtKB/TrEMBL
  A0A8D0WDX5_PIG UniProtKB/TrEMBL
  A0A8D0WFV1_PIG UniProtKB/TrEMBL
  A0A8D0YWL7_PIG UniProtKB/TrEMBL
  A0A8D1CMK4_PIG UniProtKB/TrEMBL
  A0A8D1EP39 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1H300_PIG UniProtKB/TrEMBL
  A0A8D1S2P9_PIG UniProtKB/TrEMBL
  A0A8D1S5Q1_PIG UniProtKB/TrEMBL
  F1RQC2 ENTREZGENE, UniProtKB/TrEMBL
  K9IVH1 ENTREZGENE
UniProt Secondary K9IVH1 UniProtKB/TrEMBL
VGNC ID VGNC:88327 ENTREZGENE