HCRTR1 (hypocretin receptor 1) - Rat Genome Database

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Gene: HCRTR1 (hypocretin receptor 1) Sus scrofa
Analyze
Symbol: HCRTR1
Name: hypocretin receptor 1
RGD ID: 14131536
Description: ENCODES a protein that exhibits orexin receptor activity (ortholog); peptide hormone binding (ortholog); INVOLVED IN G protein-coupled receptor signaling pathway (ortholog); neuropeptide signaling pathway (ortholog); positive regulation of ERK1 and ERK2 cascade (ortholog); PARTICIPATES IN G protein mediated signaling pathway via Galphaq family; orexin/hypocretin signaling pathway; orexin/hypocretin signaling pathway via orexin/hypocretin receptor 1; ASSOCIATED WITH Cocaine-Related Disorders (ortholog); genetic disease (ortholog); withdrawal disorder (ortholog); FOUND IN plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: hypocretin receptor type 1; orexin receptor 1; orexin receptor type 1; orexin/Hypocretin receptor type 1; ox-1-R; ox1-R; ox1R
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl688,139,498 - 88,154,848 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1688,139,623 - 88,149,531 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2681,853,666 - 81,864,501 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)
plasma membrane  (IEA,ISS)

Molecular Function

References
Additional References at PubMed
PMID:19394166   PMID:20610868   PMID:20688107   PMID:21888930   PMID:22301074   PMID:23746541   PMID:30032202  


Genomics

Comparative Map Data
HCRTR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl688,139,498 - 88,154,848 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1688,139,623 - 88,149,531 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2681,853,666 - 81,864,501 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HCRTR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38131,617,689 - 31,634,492 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl131,617,686 - 31,632,518 (+)EnsemblGRCh38hg38GRCh38
GRCh37132,083,290 - 32,093,214 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36131,857,228 - 31,865,301 (+)NCBINCBI36Build 36hg18NCBI36
Build 34131,753,733 - 31,761,807NCBI
Celera130,352,534 - 30,362,141 (+)NCBICelera
Cytogenetic Map1p35.2NCBI
HuRef130,200,818 - 30,210,425 (+)NCBIHuRef
CHM1_1132,199,098 - 32,208,715 (+)NCBICHM1_1
T2T-CHM13v2.0131,475,343 - 31,490,165 (+)NCBIT2T-CHM13v2.0
Hcrtr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394130,024,010 - 130,033,389 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4130,024,010 - 130,033,152 (-)EnsemblGRCm39 Ensembl
GRCm384130,130,217 - 130,139,594 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4130,130,217 - 130,139,359 (-)EnsemblGRCm38mm10GRCm38
MGSCv374129,807,461 - 129,816,406 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364129,632,521 - 129,641,466 (-)NCBIMGSCv36mm8
Celera4128,464,692 - 128,473,445 (-)NCBICelera
Cytogenetic Map4D2.2NCBI
cM Map463.43NCBI
Hcrtr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85147,761,392 - 147,771,846 (-)NCBIGRCr8
mRatBN7.25142,477,214 - 142,486,674 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5142,477,214 - 142,486,674 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5145,177,816 - 145,187,460 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05146,947,628 - 146,957,270 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05146,945,402 - 146,954,867 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05148,346,029 - 148,355,404 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5148,346,031 - 148,355,406 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05152,064,507 - 152,073,882 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45149,160,739 - 149,170,736 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15149,170,777 - 149,180,775 (-)NCBI
Celera5140,944,936 - 140,954,306 (-)NCBICelera
Cytogenetic Map5q36NCBI
Hcrtr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545210,026,464 - 10,036,186 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545210,026,464 - 10,036,267 (+)NCBIChiLan1.0ChiLan1.0
HCRTR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21195,201,771 - 195,212,007 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11194,323,439 - 194,333,994 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0130,901,772 - 30,913,633 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1131,918,650 - 31,928,290 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl131,919,980 - 31,928,290 (+)Ensemblpanpan1.1panPan2
HCRTR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1269,484,776 - 69,493,956 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl269,480,199 - 69,494,005 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha266,064,201 - 66,072,739 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0270,050,261 - 70,058,799 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl270,045,316 - 70,057,436 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1266,886,002 - 66,894,539 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0267,882,448 - 67,890,972 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0268,881,857 - 68,890,396 (-)NCBIUU_Cfam_GSD_1.0
Hcrtr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505848,908,833 - 48,920,670 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647414,735,638 - 14,742,854 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647414,735,654 - 14,744,112 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HCRTR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120101,241,742 - 101,252,841 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20101,243,586 - 101,251,349 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603315,439,702 - 15,447,823 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hcrtr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476414,862,397 - 14,869,739 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476414,861,672 - 14,872,728 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in HCRTR1
266 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system nervous system
High
Medium
Low 2
Below cutoff 1 7

Sequence


RefSeq Acc Id: ENSSSCT00000003996   ⟹   ENSSSCP00000003905
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl688,139,498 - 88,154,848 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000045940   ⟹   ENSSSCP00000037633
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl688,139,623 - 88,149,531 (+)Ensembl
RefSeq Acc Id: NM_001043346   ⟹   NP_001036811
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1688,139,623 - 88,149,531 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001036811   ⟸   NM_001043346
- UniProtKB: Q2MK77 (UniProtKB/Swiss-Prot),   O97661 (UniProtKB/Swiss-Prot),   A0A8D0SIV9 (UniProtKB/TrEMBL),   A0A8D1M4S1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000037633   ⟸   ENSSSCT00000045940
RefSeq Acc Id: ENSSSCP00000003905   ⟸   ENSSSCT00000003996

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000003601 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005023961 UniProtKB/TrEMBL
  ENSSSCG00025055370 UniProtKB/TrEMBL
  ENSSSCG00030024344 UniProtKB/TrEMBL
  ENSSSCG00045037509 UniProtKB/TrEMBL
  ENSSSCG00050032190 UniProtKB/TrEMBL
  ENSSSCG00055001276 UniProtKB/TrEMBL
  ENSSSCG00060068419 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000003996.4 UniProtKB/TrEMBL
  ENSSSCT00000045940 ENTREZGENE
  ENSSSCT00000045940.3 UniProtKB/TrEMBL
  ENSSSCT00005037971.1 UniProtKB/TrEMBL
  ENSSSCT00025075973.1 UniProtKB/TrEMBL
  ENSSSCT00030033897.1 UniProtKB/TrEMBL
  ENSSSCT00045064760.1 UniProtKB/TrEMBL
  ENSSSCT00050043236.1 UniProtKB/TrEMBL
  ENSSSCT00055002327.1 UniProtKB/TrEMBL
  ENSSSCT00060093408.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Orexin_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Orexin_rcpt_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report ssc:387287 UniProtKB/Swiss-Prot
NCBI Gene HCRTR1 ENTREZGENE
PANTHER G_PROTEIN_RECEP_F1_2 DOMAIN-CONTAINING PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LEUCOKININ RECEPTOR-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam 7tm_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  OREXIN1R UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  OREXINR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART 7TM_GPCR_Srsx UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A287A138_PIG UniProtKB/TrEMBL
  A0A8D0SIV9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1M4S1 ENTREZGENE, UniProtKB/TrEMBL
  F1SVA1_PIG UniProtKB/TrEMBL
  O97661 ENTREZGENE, UniProtKB/Swiss-Prot
  Q2MK77 ENTREZGENE
UniProt Secondary Q2MK77 UniProtKB/Swiss-Prot
VGNC ID VGNC:88807 ENTREZGENE