ACADSB (acyl-CoA dehydrogenase short/branched chain) - Rat Genome Database
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Gene: ACADSB (acyl-CoA dehydrogenase short/branched chain) Sus scrofa
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Symbol: ACADSB
Name: acyl-CoA dehydrogenase short/branched chain
RGD ID: 14131472
Description: ENCODES a protein that exhibits 2-methylacyl-CoA dehydrogenase activity (ortholog); electron transfer activity (ortholog); identical protein binding (ortholog); INVOLVED IN acyl-CoA metabolic process (ortholog); fatty acid metabolic process (ortholog); isoleucine catabolic process (ortholog); PARTICIPATES IN 3-hydroxy-3-methylglutaryl-CoA lyase deficiency pathway; 3-hydroxyisobutyric aciduria pathway; 3-methylcrotonyl CoA carboxylase 1 deficiency pathway; ASSOCIATED WITH 2-Methylbutyryl-CoA Dehydrogenase Deficiency (ortholog); autistic disorder (ortholog); epilepsy (ortholog); FOUND IN mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Also known as: short/branched chain specific acyl-CoA dehydrogenase, mitochondrial
Orthologs:
Homo sapiens (human) : ACADSB (acyl-CoA dehydrogenase short/branched chain)  HGNC  Alliance
Mus musculus (house mouse) : Acadsb (acyl-Coenzyme A dehydrogenase, short/branched chain)  MGI  Alliance
Rattus norvegicus (Norway rat) : Acadsb (acyl-CoA dehydrogenase, short/branched chain)  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Acadsb (acyl-CoA dehydrogenase short/branched chain)
Pan paniscus (bonobo/pygmy chimpanzee) : ACADSB (acyl-CoA dehydrogenase short/branched chain)
Canis lupus familiaris (dog) : ACADSB (acyl-CoA dehydrogenase short/branched chain)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Acadsb (acyl-CoA dehydrogenase short/branched chain)
Chlorocebus sabaeus (African green monkey) : ACADSB (acyl-CoA dehydrogenase short/branched chain)
Heterocephalus glaber (naked mole-rat) : Acadsb (acyl-CoA dehydrogenase short/branched chain)
more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14132,563,309 - 132,626,841 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114132,563,002 - 132,607,574 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214144,149,537 - 144,190,530 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:14681463  


Genomics

Comparative Map Data
ACADSB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14132,563,309 - 132,626,841 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114132,563,002 - 132,607,574 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214144,149,537 - 144,190,530 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ACADSB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl10123,008,979 - 123,058,311 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl10123,008,979 - 123,058,290 (+)EnsemblGRCh38hg38GRCh38
GRCh3810123,009,006 - 123,058,290 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh3710124,768,429 - 124,817,806 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3610124,758,419 - 124,807,796 (+)NCBINCBI36hg18NCBI36
Build 3410124,758,523 - 124,807,795NCBI
Celera10118,474,901 - 118,524,347 (+)NCBI
Cytogenetic Map10q26.13NCBI
HuRef10118,386,177 - 118,435,556 (+)NCBIHuRef
CHM1_110125,050,159 - 125,099,529 (+)NCBICHM1_1
Acadsb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397131,012,330 - 131,047,940 (+)NCBI
GRCm387131,410,601 - 131,446,211 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7131,410,601 - 131,448,944 (+)EnsemblGRCm38mm10GRCm38
MGSCv377138,554,115 - 138,589,725 (+)NCBIGRCm37mm9NCBIm37
MGSCv367131,201,849 - 131,237,354 (+)NCBImm8
Celera7131,221,745 - 131,258,475 (+)NCBICelera
Cytogenetic Map7F3NCBI
Acadsb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01201,981,362 - 202,022,771 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1201,981,357 - 202,021,008 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01209,013,684 - 209,048,775 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41190,987,657 - 191,026,275 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11191,165,470 - 191,176,156 (+)NCBI
Celera1183,943,792 - 183,982,502 (+)NCBICelera
Cytogenetic Map1q41NCBI
Acadsb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554771,177,680 - 1,213,347 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554771,177,704 - 1,213,347 (+)NCBIChiLan1.0ChiLan1.0
ACADSB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.110123,839,570 - 123,886,759 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10123,839,570 - 123,886,759 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v010119,565,913 - 119,612,092 (+)NCBIMhudiblu_PPA_v0panPan3
ACADSB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2832,563,671 - 32,601,063 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12832,563,697 - 32,604,006 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Acadsb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493648611,668,099 - 11,707,946 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACADSB
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl9115,684,279 - 115,724,412 (+)Ensembl
ChlSab1.19115,684,301 - 115,725,801 (+)NCBI
Acadsb
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473723,949,008 - 23,999,544 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 5 3 3 3 2 22 2 1
Low 5 1 2 1 2 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000011734   ⟹   ENSSSCP00000011432
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl14132,563,309 - 132,626,841 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000040765   ⟹   ENSSSCP00000050410
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl14132,587,127 - 132,626,841 (+)Ensembl
RefSeq Acc Id: XM_001926297   ⟹   XP_001926332
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.114132,563,002 - 132,607,574 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_001926332 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_001926332   ⟸   XM_001926297
- UniProtKB: A0A287B1V1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000050410   ⟸   ENSSSCT00000040765
RefSeq Acc Id: ENSSSCP00000011432   ⟸   ENSSSCT00000011734
Protein Domains
Acyl-CoA_dh_1   Acyl-CoA_dh_M   Acyl-CoA_dh_N


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000010723 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070000426 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000011432 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000050410 UniProtKB/TrEMBL
  ENSSSCP00070000710 UniProtKB/TrEMBL
  ENSSSCP00070000720 UniProtKB/TrEMBL
  ENSSSCP00070000723 UniProtKB/TrEMBL
  ENSSSCP00070000733 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000011734 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000040765 UniProtKB/TrEMBL
  ENSSSCT00070000808 UniProtKB/TrEMBL
  ENSSSCT00070000819 UniProtKB/TrEMBL
  ENSSSCT00070000822 UniProtKB/TrEMBL
  ENSSSCT00070000833 UniProtKB/TrEMBL
Gene3D-CATH 1.10.540.10 UniProtKB/TrEMBL
InterPro Acyl-CoA_DH_CS UniProtKB/TrEMBL
  Acyl-CoA_Oxase/DH_cen-dom UniProtKB/TrEMBL
  AcylCo_DH-like_C UniProtKB/TrEMBL
  AcylCo_DH/oxidase_C UniProtKB/TrEMBL
  AcylCoA_DH/ox_N UniProtKB/TrEMBL
  AcylCoA_DH/ox_N_sf UniProtKB/TrEMBL
  AcylCoA_DH/oxidase_NM_dom UniProtKB/TrEMBL
KEGG Report ssc:100154810 UniProtKB/TrEMBL
NCBI Gene ACADSB ENTREZGENE
Pfam Acyl-CoA_dh_1 UniProtKB/TrEMBL
  Acyl-CoA_dh_M UniProtKB/TrEMBL
  Acyl-CoA_dh_N UniProtKB/TrEMBL
PROSITE ACYL_COA_DH_1 UniProtKB/TrEMBL
Superfamily-SCOP SSF47203 UniProtKB/TrEMBL
  SSF56645 UniProtKB/TrEMBL
UniGene Ssc.29324 ENTREZGENE
  Ssc.71959 ENTREZGENE
UniProt A0A287B1V1 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SF08_PIG UniProtKB/TrEMBL
  A0A4X1SF17_PIG UniProtKB/TrEMBL
  A0A4X1SFV4_PIG UniProtKB/TrEMBL
  F1SED0_PIG UniProtKB/TrEMBL
VGNC ID VGNC:97863 ENTREZGENE