MTERF3 (mitochondrial transcription termination factor 3) - Rat Genome Database

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Gene: MTERF3 (mitochondrial transcription termination factor 3) Sus scrofa
Analyze
Symbol: MTERF3
Name: mitochondrial transcription termination factor 3
RGD ID: 14130580
Description: ENCODES a protein that exhibits double-stranded DNA binding (inferred); transcription cis-regulatory region binding (inferred); INVOLVED IN mitochondrial ribosome assembly (inferred); mitochondrial transcription (inferred); negative regulation of DNA-templated transcription (inferred); ASSOCIATED WITH genetic disease (ortholog); Klippel-Feil syndrome 1 (ortholog); FOUND IN cytosol (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: MTERF domain containing 1; MTERFD1; transcription termination factor 3, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl440,376,187 - 40,399,609 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1440,376,146 - 40,399,614 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2443,554,874 - 43,578,509 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IEA)
mitochondrion  (IBA,IEA)

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:15679890   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
MTERF3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl440,376,187 - 40,399,609 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1440,376,146 - 40,399,614 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2443,554,874 - 43,578,509 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MTERF3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38896,239,398 - 96,261,613 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl896,239,398 - 96,261,610 (-)EnsemblGRCh38hg38GRCh38
GRCh37897,251,626 - 97,273,841 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36897,320,821 - 97,342,972 (-)NCBINCBI36Build 36hg18NCBI36
Celera893,437,637 - 93,459,789 (-)NCBICelera
Cytogenetic Map8q22.1NCBI
HuRef892,457,196 - 92,479,318 (-)NCBIHuRef
CHM1_1897,291,884 - 97,314,036 (-)NCBICHM1_1
T2T-CHM13v2.0897,364,733 - 97,387,331 (-)NCBIT2T-CHM13v2.0
Mterf3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391367,053,520 - 67,081,148 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1367,055,032 - 67,081,152 (-)EnsemblGRCm39 Ensembl
GRCm381366,906,577 - 66,933,083 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1366,906,968 - 66,933,088 (-)EnsemblGRCm38mm10GRCm38
MGSCv371367,013,031 - 67,034,008 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361367,347,875 - 67,368,816 (-)NCBIMGSCv36mm8
Celera1370,371,705 - 70,392,691 (+)NCBICelera
Cytogenetic Map13B3NCBI
cM Map1334.54NCBI
Mterf3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8765,711,654 - 65,729,926 (-)NCBIGRCr8
mRatBN7.2763,826,418 - 63,844,747 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl763,826,427 - 63,844,658 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx765,715,625 - 65,733,862 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0767,917,913 - 67,936,045 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0767,710,575 - 67,728,810 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0771,275,544 - 71,293,842 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl771,273,275 - 71,293,823 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0771,447,410 - 71,465,707 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4767,969,806 - 67,988,047 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1767,990,538 - 68,008,777 (-)NCBI
Celera760,959,013 - 60,977,102 (-)NCBICelera
Cytogenetic Map7q22NCBI
Mterf3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541712,235,490 - 12,269,261 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541712,232,897 - 12,268,572 (-)NCBIChiLan1.0ChiLan1.0
MTERF3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27113,571,849 - 113,594,083 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1889,110,771 - 89,132,986 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0892,864,512 - 92,886,757 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1895,062,088 - 95,084,035 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl895,062,088 - 95,084,035 (-)Ensemblpanpan1.1panPan2
MTERF3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12940,750,863 - 40,772,111 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2940,750,909 - 40,768,956 (-)NCBICanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2940,750,909 - 40,768,956 (-)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.02940,942,583 - 40,963,883 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2940,940,419 - 40,960,049 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12940,985,409 - 41,006,682 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02940,954,494 - 40,975,700 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02941,417,269 - 41,438,499 (-)NCBIUU_Cfam_GSD_1.0
Mterf3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530338,849,499 - 38,870,372 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647046,275,587 - 46,296,456 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647046,275,587 - 46,296,456 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MTERF3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1891,203,095 - 91,223,524 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl891,203,169 - 91,223,512 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603949,560,948 - 49,584,538 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mterf3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247633,556,483 - 3,587,318 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247633,558,707 - 3,587,546 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in MTERF3
780 total Variants

Expression


Sequence


RefSeq Acc Id: ENSSSCT00000006681   ⟹   ENSSSCP00000006501
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl440,376,187 - 40,399,609 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000041831   ⟹   ENSSSCP00000034377
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl440,376,187 - 40,399,544 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000048089   ⟹   ENSSSCP00000057605
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl440,378,045 - 40,399,608 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000053158   ⟹   ENSSSCP00000033604
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl440,378,830 - 40,409,059 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000074535   ⟹   ENSSSCP00000071227
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl440,376,183 - 40,397,965 (+)Ensembl
RefSeq Acc Id: XM_001929271   ⟹   XP_001929306
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1440,376,147 - 40,399,614 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005662952   ⟹   XP_005663009
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1440,376,146 - 40,399,614 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021089076   ⟹   XP_020944735
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1440,376,146 - 40,399,614 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021089077   ⟹   XP_020944736
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1440,376,147 - 40,399,614 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020944735   ⟸   XM_021089076
- Peptide Label: isoform X1
- UniProtKB: A0A287BLV9 (UniProtKB/TrEMBL),   A0A4X1U2R5 (UniProtKB/TrEMBL),   A0A8D0PM69 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005663009   ⟸   XM_005662952
- Peptide Label: isoform X1
- UniProtKB: A0A287BLV9 (UniProtKB/TrEMBL),   A0A4X1U2R5 (UniProtKB/TrEMBL),   A0A8D0PM69 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020944736   ⟸   XM_021089077
- Peptide Label: isoform X2
- UniProtKB: A0A4X1U2Q6 (UniProtKB/TrEMBL),   F1RY61 (UniProtKB/TrEMBL),   A0A8D0YAA5 (UniProtKB/TrEMBL),   A0A8D0KI38 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_001929306   ⟸   XM_001929271
- Peptide Label: isoform X2
- UniProtKB: A0A4X1U2Q6 (UniProtKB/TrEMBL),   F1RY61 (UniProtKB/TrEMBL),   A0A8D0YAA5 (UniProtKB/TrEMBL),   A0A8D0KI38 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000071227   ⟸   ENSSSCT00000074535
RefSeq Acc Id: ENSSSCP00000006501   ⟸   ENSSSCT00000006681
RefSeq Acc Id: ENSSSCP00000034377   ⟸   ENSSSCT00000041831
RefSeq Acc Id: ENSSSCP00000033604   ⟸   ENSSSCT00000053158
RefSeq Acc Id: ENSSSCP00000057605   ⟸   ENSSSCT00000048089


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000006090 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005041850 UniProtKB/TrEMBL
  ENSSSCG00015065172 UniProtKB/TrEMBL
  ENSSSCG00025067012 UniProtKB/TrEMBL
  ENSSSCG00030073081 UniProtKB/TrEMBL
  ENSSSCG00035027366 UniProtKB/TrEMBL
  ENSSSCG00040015139 UniProtKB/TrEMBL
  ENSSSCG00045030183 UniProtKB/TrEMBL
  ENSSSCG00050078594 UniProtKB/TrEMBL
  ENSSSCG00055029238 UniProtKB/TrEMBL
  ENSSSCG00060073316 UniProtKB/TrEMBL
  ENSSSCG00065035488 UniProtKB/TrEMBL
  ENSSSCG00070010548 UniProtKB/TrEMBL
  ENSSSCG00070013564 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000006681 ENTREZGENE
  ENSSSCT00000006681.5 UniProtKB/TrEMBL
  ENSSSCT00000041831.3 UniProtKB/TrEMBL
  ENSSSCT00000048089 ENTREZGENE
  ENSSSCT00000048089.3 UniProtKB/TrEMBL
  ENSSSCT00005067064.1 UniProtKB/TrEMBL
  ENSSSCT00005067073.1 UniProtKB/TrEMBL
  ENSSSCT00005067081.1 UniProtKB/TrEMBL
  ENSSSCT00005067089.1 UniProtKB/TrEMBL
  ENSSSCT00005067194.1 UniProtKB/TrEMBL
  ENSSSCT00015087448.1 UniProtKB/TrEMBL
  ENSSSCT00015087498.1 UniProtKB/TrEMBL
  ENSSSCT00015087557.1 UniProtKB/TrEMBL
  ENSSSCT00025092069.1 UniProtKB/TrEMBL
  ENSSSCT00025092213.1 UniProtKB/TrEMBL
  ENSSSCT00025092335.1 UniProtKB/TrEMBL
  ENSSSCT00030102341.1 UniProtKB/TrEMBL
  ENSSSCT00030102352.1 UniProtKB/TrEMBL
  ENSSSCT00030102381.1 UniProtKB/TrEMBL
  ENSSSCT00035036162.1 UniProtKB/TrEMBL
  ENSSSCT00035036172.1 UniProtKB/TrEMBL
  ENSSSCT00035036185.1 UniProtKB/TrEMBL
  ENSSSCT00040020353.1 UniProtKB/TrEMBL
  ENSSSCT00040020363.1 UniProtKB/TrEMBL
  ENSSSCT00040020407.1 UniProtKB/TrEMBL
  ENSSSCT00045051490.1 UniProtKB/TrEMBL
  ENSSSCT00045051587.1 UniProtKB/TrEMBL
  ENSSSCT00045051686.1 UniProtKB/TrEMBL
  ENSSSCT00050108317.1 UniProtKB/TrEMBL
  ENSSSCT00050108318.1 UniProtKB/TrEMBL
  ENSSSCT00050108327.1 UniProtKB/TrEMBL
  ENSSSCT00055058046.1 UniProtKB/TrEMBL
  ENSSSCT00055058065.1 UniProtKB/TrEMBL
  ENSSSCT00055058079.1 UniProtKB/TrEMBL
  ENSSSCT00060100175.1 UniProtKB/TrEMBL
  ENSSSCT00060100222.1 UniProtKB/TrEMBL
  ENSSSCT00060100306.1 UniProtKB/TrEMBL
  ENSSSCT00065048338.1 UniProtKB/TrEMBL
  ENSSSCT00065048343.1 UniProtKB/TrEMBL
  ENSSSCT00065048351.1 UniProtKB/TrEMBL
  ENSSSCT00070020477.1 UniProtKB/TrEMBL
  ENSSSCT00070026468.1 UniProtKB/TrEMBL
  ENSSSCT00070026475.1 UniProtKB/TrEMBL
  ENSSSCT00070026502.1 UniProtKB/TrEMBL
  ENSSSCT00070026510.1 UniProtKB/TrEMBL
  ENSSSCT00070026514.1 UniProtKB/TrEMBL
  ENSSSCT00070026522.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.70.10 UniProtKB/TrEMBL
InterPro MTERF UniProtKB/TrEMBL
  MTERF_sf UniProtKB/TrEMBL
KEGG Report ssc:100152384 UniProtKB/TrEMBL
NCBI Gene MTERF3 ENTREZGENE
PANTHER PTHR13068 UniProtKB/TrEMBL
  TRANSCRIPTION TERMINATION FACTOR 3, MITOCHONDRIAL UniProtKB/TrEMBL
Pfam mTERF UniProtKB/TrEMBL
SMART Mterf UniProtKB/TrEMBL
UniProt A0A286ZS26_PIG UniProtKB/TrEMBL
  A0A287BLV9 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TPB1_PIG UniProtKB/TrEMBL
  A0A4X1U2E6_PIG UniProtKB/TrEMBL
  A0A4X1U2Q6 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1U2R5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0KBZ4_PIG UniProtKB/TrEMBL
  A0A8D0KI38 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0PM69 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0Y4N8_PIG UniProtKB/TrEMBL
  A0A8D0YAA5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1CIJ9_PIG UniProtKB/TrEMBL
  A0A8D1DLW3_PIG UniProtKB/TrEMBL
  A0A8D1DLY3_PIG UniProtKB/TrEMBL
  A0A8D1WQU4_PIG UniProtKB/TrEMBL
  F1RY61 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:90442 ENTREZGENE