MCL1 (MCL1 apoptosis regulator, BCL2 family member) - Rat Genome Database

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Gene: MCL1 (MCL1 apoptosis regulator, BCL2 family member) Sus scrofa
Analyze
Symbol: MCL1
Name: MCL1 apoptosis regulator, BCL2 family member
RGD ID: 14130478
Description: ENCODES a protein that exhibits BH domain binding (ortholog); protein dimerization activity (ortholog); protein-containing complex binding (ortholog); INVOLVED IN DNA damage response (ortholog); intrinsic apoptotic signaling pathway in response to DNA damage (ortholog); negative regulation of apoptotic process (ortholog); PARTICIPATES IN hypoxia inducible factor pathway; interleukin-6 signaling pathway; intrinsic apoptotic pathway; ASSOCIATED WITH Barrett's esophagus (ortholog); colon cancer (ortholog); colorectal cancer (ortholog); FOUND IN Bcl-2 family protein complex (ortholog); INTERACTS WITH lipopolysaccharide
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: BCL2 family apoptosis regulator; induced myeloid leukemia cell differentiation protein Mcl-1; MCL1, BCL2 family apoptosis regulator; myeloid cell leukemia protein 1; myeloid cell leukemia sequence 1 (BCL2-related)
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl498,534,812 - 98,567,006 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1498,562,092 - 98,567,014 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24107,809,204 - 107,814,036 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:8889548   PMID:14681463   PMID:17145712   PMID:30032202  


Genomics

Comparative Map Data
MCL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl498,534,812 - 98,567,006 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1498,562,092 - 98,567,014 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24107,809,204 - 107,814,036 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MCL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381150,574,558 - 150,579,610 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1150,560,895 - 150,579,738 (-)EnsemblGRCh38hg38GRCh38
GRCh371150,547,034 - 150,552,086 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361148,813,658 - 148,818,760 (-)NCBINCBI36Build 36hg18NCBI36
Build 341147,360,106 - 147,365,209NCBI
Celera1123,662,793 - 123,667,900 (-)NCBICelera
Cytogenetic Map1q21.2NCBI
HuRef1121,925,157 - 121,930,349 (-)NCBIHuRef
CHM1_11151,942,802 - 151,947,994 (-)NCBICHM1_1
T2T-CHM13v2.01149,698,578 - 149,703,635 (-)NCBIT2T-CHM13v2.0
Mcl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39395,564,017 - 95,583,553 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl395,566,099 - 95,570,487 (+)EnsemblGRCm39 Ensembl
GRCm38395,656,944 - 95,663,179 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl395,658,788 - 95,663,176 (+)EnsemblGRCm38mm10GRCm38
MGSCv37395,462,643 - 95,467,102 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36395,744,192 - 95,748,584 (+)NCBIMGSCv36mm8
MGSCv36395,942,505 - 95,946,924 (+)NCBIMGSCv36mm8
Celera397,090,304 - 97,094,626 (+)NCBICelera
Cytogenetic Map3F2.1NCBI
cM Map340.74NCBI
Mcl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82185,884,840 - 185,912,532 (+)NCBIGRCr8
mRatBN7.22183,219,137 - 183,235,676 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2183,219,220 - 183,222,303 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2190,884,075 - 190,887,160 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02188,679,562 - 188,682,647 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02183,516,603 - 183,519,688 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02197,786,212 - 197,788,992 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02217,273,158 - 217,275,930 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera2175,749,995 - 175,752,956 (+)NCBICelera
Cytogenetic Map2q34NCBI
Mcl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955413238,043 - 243,317 (+)NCBIChiLan1.0ChiLan1.0
MCL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2199,257,840 - 99,264,868 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1199,013,464 - 99,018,758 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01125,918,760 - 125,923,952 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11129,566,827 - 129,572,086 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1129,566,827 - 129,572,086 (-)Ensemblpanpan1.1panPan2
MCL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11759,759,605 - 59,763,111 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1759,759,605 - 59,763,111 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1759,205,905 - 59,209,411 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01760,773,751 - 60,778,808 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1760,773,753 - 60,778,722 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11759,605,427 - 59,608,935 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01759,689,378 - 59,692,878 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01760,416,999 - 60,420,508 (-)NCBIUU_Cfam_GSD_1.0
Mcl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505821,772,943 - 21,777,059 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936580804,903 - 806,796 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936580803,452 - 806,966 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MCL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366603812,707,472 - 12,712,711 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mcl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477218,289,509 - 18,319,033 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477218,287,587 - 18,292,384 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in MCL1
82 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 4 3 5 2 23 2 3 3
Low
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000038126   ⟹   ENSSSCP00000037645
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl498,534,812 - 98,567,006 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000051378   ⟹   ENSSSCP00000049952
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl498,527,907 - 98,564,276 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000055424   ⟹   ENSSSCP00000056528
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl498,527,907 - 98,567,006 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000084046   ⟹   ENSSSCP00000066286
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl498,562,234 - 98,567,006 (+)Ensembl
RefSeq Acc Id: NM_001348806   ⟹   NP_001335735
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1498,562,092 - 98,567,014 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001335735   ⟸   NM_001348806
- UniProtKB: K9IWB2 (UniProtKB/TrEMBL),   A0A287BK44 (UniProtKB/TrEMBL),   A0A4X1SFB1 (UniProtKB/TrEMBL),   A0A287A145 (UniProtKB/TrEMBL),   A0A8D1G1G8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000066286   ⟸   ENSSSCT00000084046
RefSeq Acc Id: ENSSSCP00000049952   ⟸   ENSSSCT00000051378
RefSeq Acc Id: ENSSSCP00000056528   ⟸   ENSSSCT00000055424
RefSeq Acc Id: ENSSSCP00000037645   ⟸   ENSSSCT00000038126

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000039314 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005013092 UniProtKB/TrEMBL
  ENSSSCG00015005566 UniProtKB/TrEMBL
  ENSSSCG00015005631 UniProtKB/TrEMBL
  ENSSSCG00025057648 UniProtKB/TrEMBL
  ENSSSCG00025058261 UniProtKB/TrEMBL
  ENSSSCG00030055340 UniProtKB/TrEMBL
  ENSSSCG00030055540 UniProtKB/TrEMBL
  ENSSSCG00035056946 UniProtKB/TrEMBL
  ENSSSCG00035057376 UniProtKB/TrEMBL
  ENSSSCG00040068851 UniProtKB/TrEMBL
  ENSSSCG00040069548 UniProtKB/TrEMBL
  ENSSSCG00045018078 UniProtKB/TrEMBL
  ENSSSCG00045018440 UniProtKB/TrEMBL
  ENSSSCG00050061313 UniProtKB/TrEMBL
  ENSSSCG00050076853 UniProtKB/TrEMBL
  ENSSSCG00055025710 UniProtKB/TrEMBL
  ENSSSCG00055025978 UniProtKB/TrEMBL
  ENSSSCG00060017827 UniProtKB/TrEMBL
  ENSSSCG00060018714 UniProtKB/TrEMBL
  ENSSSCG00065068036 UniProtKB/TrEMBL
  ENSSSCG00065068584 UniProtKB/TrEMBL
  ENSSSCG00070000400 UniProtKB/TrEMBL
  ENSSSCG00070000430 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000038126 ENTREZGENE
  ENSSSCT00000038126.3 UniProtKB/TrEMBL
  ENSSSCT00000084046.1 UniProtKB/TrEMBL
  ENSSSCT00005020794.1 UniProtKB/TrEMBL
  ENSSSCT00015007415.1 UniProtKB/TrEMBL
  ENSSSCT00015007501.1 UniProtKB/TrEMBL
  ENSSSCT00015007506.1 UniProtKB/TrEMBL
  ENSSSCT00025078922.1 UniProtKB/TrEMBL
  ENSSSCT00025079931.1 UniProtKB/TrEMBL
  ENSSSCT00025080041.1 UniProtKB/TrEMBL
  ENSSSCT00025080203.1 UniProtKB/TrEMBL
  ENSSSCT00030077180.1 UniProtKB/TrEMBL
  ENSSSCT00030077201.1 UniProtKB/TrEMBL
  ENSSSCT00030077382.1 UniProtKB/TrEMBL
  ENSSSCT00035076136.1 UniProtKB/TrEMBL
  ENSSSCT00035076162.1 UniProtKB/TrEMBL
  ENSSSCT00035076172.1 UniProtKB/TrEMBL
  ENSSSCT00035076745.1 UniProtKB/TrEMBL
  ENSSSCT00040094313.1 UniProtKB/TrEMBL
  ENSSSCT00040095633.1 UniProtKB/TrEMBL
  ENSSSCT00040095707.1 UniProtKB/TrEMBL
  ENSSSCT00040095795.1 UniProtKB/TrEMBL
  ENSSSCT00040095996.1 UniProtKB/TrEMBL
  ENSSSCT00045030845.1 UniProtKB/TrEMBL
  ENSSSCT00045031044.1 UniProtKB/TrEMBL
  ENSSSCT00045031188.1 UniProtKB/TrEMBL
  ENSSSCT00045031402.1 UniProtKB/TrEMBL
  ENSSSCT00050083544.1 UniProtKB/TrEMBL
  ENSSSCT00050105665.1 UniProtKB/TrEMBL
  ENSSSCT00050105667.1 UniProtKB/TrEMBL
  ENSSSCT00055050884.1 UniProtKB/TrEMBL
  ENSSSCT00055051513.1 UniProtKB/TrEMBL
  ENSSSCT00055051578.1 UniProtKB/TrEMBL
  ENSSSCT00055051659.1 UniProtKB/TrEMBL
  ENSSSCT00060023891.1 UniProtKB/TrEMBL
  ENSSSCT00060025219.1 UniProtKB/TrEMBL
  ENSSSCT00060025225.1 UniProtKB/TrEMBL
  ENSSSCT00060025233.1 UniProtKB/TrEMBL
  ENSSSCT00060025269.1 UniProtKB/TrEMBL
  ENSSSCT00065093407.1 UniProtKB/TrEMBL
  ENSSSCT00065094189.1 UniProtKB/TrEMBL
  ENSSSCT00065094193.1 UniProtKB/TrEMBL
  ENSSSCT00065094211.1 UniProtKB/TrEMBL
  ENSSSCT00070000735.1 UniProtKB/TrEMBL
  ENSSSCT00070000793.1 UniProtKB/TrEMBL
  ENSSSCT00070000804.1 UniProtKB/TrEMBL
  ENSSSCT00070000812.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.437.10 UniProtKB/TrEMBL
InterPro Apop_reg_Mc1 UniProtKB/TrEMBL
  Bcl-2_BH1-3 UniProtKB/TrEMBL
  Bcl2-like UniProtKB/TrEMBL
  Bcl2_BH1_motif_CS UniProtKB/TrEMBL
  Bcl2_BH2_motif_CS UniProtKB/TrEMBL
  Bcl2_BH3_motif_CS UniProtKB/TrEMBL
  Blc2-like_sf UniProtKB/TrEMBL
  Blc2_fam UniProtKB/TrEMBL
  Endosulphine UniProtKB/TrEMBL
KEGG Report ssc:397648 UniProtKB/TrEMBL
NCBI Gene MCL1 ENTREZGENE
PANTHER ALPHA-ENDOSULFINE UniProtKB/TrEMBL
  ENDOSULFINE UniProtKB/TrEMBL
  PTHR11256 UniProtKB/TrEMBL
  PTHR11256:SF46 UniProtKB/TrEMBL
Pfam Bcl-2 UniProtKB/TrEMBL
  Endosulfine UniProtKB/TrEMBL
PRINTS APOPREGMCL1 UniProtKB/TrEMBL
  BCL2FAMILY UniProtKB/TrEMBL
PROSITE BCL2_FAMILY UniProtKB/TrEMBL
  BH1 UniProtKB/TrEMBL
  BH2 UniProtKB/TrEMBL
  BH3 UniProtKB/TrEMBL
SMART BCL UniProtKB/TrEMBL
Superfamily-SCOP SSF56854 UniProtKB/TrEMBL
UniProt A0A287A145 ENTREZGENE
  A0A287BK44 ENTREZGENE
  A0A4X1SEU3_PIG UniProtKB/TrEMBL
  A0A4X1SEZ6_PIG UniProtKB/TrEMBL
  A0A4X1SFB1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0XEZ0_PIG UniProtKB/TrEMBL
  A0A8D1G1G8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1RYD1_PIG UniProtKB/TrEMBL
  A0A8D1UJY5_PIG UniProtKB/TrEMBL
  K9IWB2 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A287A145 UniProtKB/TrEMBL
  A0A287BK44 UniProtKB/TrEMBL
  A0A5G2QQE5 UniProtKB/TrEMBL
VGNC ID VGNC:90072 ENTREZGENE