OSBPL2 (oxysterol binding protein like 2) - Rat Genome Database
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Gene: OSBPL2 (oxysterol binding protein like 2) Sus scrofa
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Symbol: OSBPL2
Name: oxysterol binding protein like 2
RGD ID: 14129796
Description: ENCODES a protein that exhibits cholesterol binding (inferred); cholesterol transfer activity (inferred); lipid binding (inferred); INVOLVED IN cholesterol transport (ortholog); ASSOCIATED WITH autosomal dominant nonsyndromic deafness 67 (ortholog); status epilepticus (ortholog); FOUND IN lipid droplet (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: oxysterol-binding protein-related protein 2
RGD Orthologs
Human
Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1761,643,366 - 61,685,819 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11761,643,263 - 61,683,178 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:14681463   PMID:17145712  


Genomics

Comparative Map Data
OSBPL2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1761,643,366 - 61,685,819 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11761,643,263 - 61,683,178 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
OSBPL2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2062,231,922 - 62,296,213 (+)EnsemblGRCh38hg38GRCh38
GRCh382062,238,521 - 62,296,183 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh372060,813,577 - 60,871,239 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map20q13.33NCBI
HuRef2057,589,834 - 57,646,867 (+)NCBIHuRef
CHM1_12060,714,603 - 60,772,035 (+)NCBICHM1_1
Osbpl2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23167,210,945 - 167,256,219 (+)NCBI
Rnor_6.0 Ensembl3175,493,698 - 175,538,963 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.03175,493,650 - 175,538,965 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.03181,579,718 - 181,624,997 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43169,174,367 - 169,219,820 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13169,080,402 - 169,125,854 (+)NCBI
Celera3165,323,956 - 165,369,180 (-)NCBICelera
Cytogenetic Map3q43NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 3 1 2 15 2 1
Low 10 3 4 8 2 1 2
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000046766   ⟹   ENSSSCP00000033778
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1761,643,398 - 61,683,174 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000051488   ⟹   ENSSSCP00000056416
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1761,655,017 - 61,683,174 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000052174   ⟹   ENSSSCP00000054870
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1761,643,368 - 61,683,189 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000070990   ⟹   ENSSSCP00000069231
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1761,643,366 - 61,683,178 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000080987   ⟹   ENSSSCP00000074380
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1761,661,850 - 61,685,819 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000081738   ⟹   ENSSSCP00000065486
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1761,643,376 - 61,683,175 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000083106   ⟹   ENSSSCP00000063604
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1761,643,401 - 61,682,142 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000087299   ⟹   ENSSSCP00000070899
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1761,643,401 - 61,685,819 (+)Ensembl
RefSeq Acc Id: XM_021078214   ⟹   XP_020933873
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11761,643,314 - 61,683,178 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021078215   ⟹   XP_020933874
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11761,643,263 - 61,683,178 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021078216   ⟹   XP_020933875
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11761,643,323 - 61,683,178 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020933873 (Get FASTA)   NCBI Sequence Viewer  
  XP_020933874 (Get FASTA)   NCBI Sequence Viewer  
  XP_020933875 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein JAA74227 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_020933874   ⟸   XM_021078215
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_020933873   ⟸   XM_021078214
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020933875   ⟸   XM_021078216
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSSSCP00000063604   ⟸   ENSSSCT00000083106
RefSeq Acc Id: ENSSSCP00000074380   ⟸   ENSSSCT00000080987
RefSeq Acc Id: ENSSSCP00000056416   ⟸   ENSSSCT00000051488
RefSeq Acc Id: ENSSSCP00000069231   ⟸   ENSSSCT00000070990
RefSeq Acc Id: ENSSSCP00000054870   ⟸   ENSSSCT00000052174
RefSeq Acc Id: ENSSSCP00000033778   ⟸   ENSSSCT00000046766
RefSeq Acc Id: ENSSSCP00000065486   ⟸   ENSSSCT00000081738
RefSeq Acc Id: ENSSSCP00000070899   ⟸   ENSSSCT00000087299


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000036835 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000033778 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000054870 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000056416 UniProtKB/TrEMBL
  ENSSSCP00000063604 UniProtKB/TrEMBL
  ENSSSCP00000065486 UniProtKB/TrEMBL
  ENSSSCP00000069231 UniProtKB/TrEMBL
  ENSSSCP00000070899 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000074380 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000046766 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000051488 UniProtKB/TrEMBL
  ENSSSCT00000052174 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000070990 UniProtKB/TrEMBL
  ENSSSCT00000080987 UniProtKB/TrEMBL
  ENSSSCT00000081738 UniProtKB/TrEMBL
  ENSSSCT00000083106 UniProtKB/TrEMBL
  ENSSSCT00000087299 ENTREZGENE, UniProtKB/TrEMBL
InterPro OSBP_sf UniProtKB/TrEMBL
  Oxysterol-bd UniProtKB/TrEMBL
  Oxysterol-bd_CS UniProtKB/TrEMBL
NCBI Gene OSBPL2 ENTREZGENE
PANTHER PTHR10972 UniProtKB/TrEMBL
Pfam Oxysterol_BP UniProtKB/TrEMBL
PROSITE OSBP UniProtKB/TrEMBL
Superfamily-SCOP SSF144000 UniProtKB/TrEMBL
UniProt A0A286ZQP4_PIG UniProtKB/TrEMBL
  A0A287BFM8_PIG UniProtKB/TrEMBL
  A0A287BII6_PIG UniProtKB/TrEMBL
  A0A5G2QH05_PIG UniProtKB/TrEMBL
  A0A5G2QLP0_PIG UniProtKB/TrEMBL
  A0A5G2QWJ2_PIG UniProtKB/TrEMBL
  A0A5G2RNF5_PIG UniProtKB/TrEMBL
  M3V843_PIG UniProtKB/TrEMBL
VGNC ID VGNC:95653 ENTREZGENE